Variant report

Variant	rs73772946
Chromosome Location	chr6:133083762-133083763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:133083684-133083884	HepG2	liver:	n/a	chr6:133083688-133083698 chr6:133083685-133083696 chr6:133083687-133083698

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133054047..133059196-chr6:133082600..133087082,5	MCF-7	breast:
2	chr6:133082471..133084490-chr6:133097635..133100360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271488	TF binding region
VNN2	TF binding region
ENSG00000093134	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11962050	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962697	1.00[AMR][1000 genomes]
rs11962777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2179535	1.00[AMR][1000 genomes]
rs55736382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55739774	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55927079	0.87[AFR][1000 genomes]
rs55937207	0.83[AFR][1000 genomes]
rs56028410	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56078645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195831	0.87[AFR][1000 genomes]
rs56272102	0.80[AFR][1000 genomes]
rs58978785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61019706	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772954	0.87[AFR][1000 genomes]
rs73772965	0.83[AFR][1000 genomes]
rs73772984	0.80[AFR][1000 genomes]
rs73772986	0.80[AFR][1000 genomes]
rs73772987	0.80[AFR][1000 genomes]
rs73772988	0.80[AFR][1000 genomes]
rs73772990	0.80[AFR][1000 genomes]
rs73772995	0.80[AFR][1000 genomes]
rs73772997	0.80[AFR][1000 genomes]
rs7768800	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
2	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:133072800-133084400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:133072800-133084800	Weak transcription	Stomach Mucosa	stomach
5	chr6:133079000-133083800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:133079000-133084800	Weak transcription	Liver	Liver
7	chr6:133079000-133085000	Weak transcription	A549	lung
8	chr6:133080400-133085000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:133080400-133085200	Weak transcription	Right Atrium	heart
10	chr6:133081400-133084600	Weak transcription	Fetal Stomach	stomach
11	chr6:133081400-133096800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:133081600-133084400	Weak transcription	Placenta	Placenta
13	chr6:133081800-133086800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:133082400-133083800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:133083000-133083800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:133083000-133084000	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:133083200-133083800	Enhancers	Primary T cells from cord blood	blood
18	chr6:133083200-133084000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:133083200-133084000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:133083200-133084400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:133083200-133085000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr6:133083200-133085000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:133083200-133085400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:133083200-133085800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:133083200-133086000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:133083200-133086600	Enhancers	Fetal Intestine Large	intestine
27	chr6:133083400-133084000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr6:133083400-133084000	Enhancers	Fetal Intestine Small	intestine
29	chr6:133083400-133084400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:133083400-133084800	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr6:133083400-133090600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:133083600-133083800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:133083600-133083800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:133083600-133083800	Enhancers	Brain Hippocampus Middle	brain
35	chr6:133083600-133084000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
36	chr6:133083600-133084400	Active TSS	Thymus	Thymus
37	chr6:133083600-133084600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:133083600-133084600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr6:133083600-133084600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:133083600-133084800	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr6:133083600-133084800	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:133083600-133084800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr6:133083600-133085200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:133083600-133085200	Weak transcription	Aorta	Aorta
45	chr6:133083600-133099000	Weak transcription	Left Ventricle	heart

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