The 2.0 version of rSNPBase

Variant report

Variant rs11962777
Chromosome Location chr6:133090309-133090310
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:133061400-133098000 Weak transcription Spleen Spleen
2 chr6:133065000-133098000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr6:133081400-133096800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr6:133083400-133090600 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr6:133083600-133099000 Weak transcription Left Ventricle heart
6 chr6:133083800-133118200 Weak transcription Brain Cingulate Gyrus brain
7 chr6:133084600-133091200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr6:133084800-133091800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr6:133084800-133097000 Weak transcription Fetal Muscle Leg muscle
10 chr6:133085000-133109000 Weak transcription GM12878-XiMat blood
11 chr6:133085000-133114600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr6:133085000-133119000 Weak transcription Thymus Thymus
13 chr6:133085200-133112200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr6:133085200-133119400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr6:133085400-133091200 Weak transcription Primary T cells from cord blood blood
16 chr6:133085400-133091200 Weak transcription Primary T cells fromperipheralblood blood
17 chr6:133085400-133114400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr6:133085600-133090400 Weak transcription Primary T helper cells fromperipheralblood blood
19 chr6:133085600-133090800 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr6:133085600-133098800 Weak transcription Brain Hippocampus Middle brain
21 chr6:133085600-133099800 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr6:133085600-133118800 Weak transcription Colon Smooth Muscle Colon
23 chr6:133085800-133091000 Weak transcription Fetal Lung lung
24 chr6:133085800-133091200 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr6:133085800-133091200 Weak transcription Placenta Placenta
26 chr6:133085800-133091200 Weak transcription Ovary ovary
27 chr6:133085800-133093200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr6:133085800-133100000 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr6:133085800-133100000 Weak transcription Aorta Aorta
30 chr6:133085800-133119000 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr6:133086000-133093600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr6:133086000-133112800 Weak transcription Hela-S3 cervix
33 chr6:133086000-133113800 Weak transcription NHEK skin
34 chr6:133086000-133118800 Weak transcription Fetal Kidney kidney
35 chr6:133086200-133107800 Weak transcription Osteobl bone
36 chr6:133086400-133096200 Weak transcription HMEC breast
37 chr6:133086400-133097000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr6:133086400-133110200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr6:133086600-133090600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr6:133086600-133099400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr6:133086600-133103400 Weak transcription Brain Anterior Caudate brain
42 chr6:133088200-133111200 Weak transcription HUVEC blood vessel
43 chr6:133088600-133098000 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr6:133088600-133099200 Weak transcription Fetal Brain Female brain
45 chr6:133088600-133114600 Weak transcription Brain Inferior Temporal Lobe brain
46 chr6:133089000-133090600 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr6:133089000-133090600 Weak transcription Stomach Smooth Muscle stomach
48 chr6:133089200-133091000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr6:133089400-133094600 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr6:133089400-133100000 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015