Variant report

Variant	rs60308475
Chromosome Location	chr6:133151293-133151294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133151125..133151898-chr6:133283825..133285077,5	MCF-7	breast:
2	chr6:133151095..133151913-chr6:133282483..133283322,2	MCF-7	breast:
3	chr6:133150708..133151595-chr6:133258178..133258935,2	K562	blood:
4	chr6:133151116..133151935-chr6:133874509..133875482,3	MCF-7	breast:
5	chr6:133151099..133152076-chr6:133282420..133283410,5	MCF-7	breast:
6	chr6:133150152..133152401-chr6:133214566..133217408,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11961405	1.00[AMR][1000 genomes]
rs11962777	0.84[AFR][1000 genomes]
rs11964612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966336	1.00[AMR][1000 genomes]
rs11966419	1.00[AMR][1000 genomes]
rs55634221	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55736382	0.85[AFR][1000 genomes]
rs55739774	0.89[AFR][1000 genomes]
rs55757918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55927079	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55937207	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56028410	0.82[AFR][1000 genomes]
rs56195831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56253921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56272102	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56335598	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56347679	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57507997	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58267486	1.00[AMR][1000 genomes]
rs58879755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58969189	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978785	0.82[AFR][1000 genomes]
rs59494178	1.00[AMR][1000 genomes]
rs60864827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61019706	0.89[AFR][1000 genomes]
rs61588260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772948	0.89[AFR][1000 genomes]
rs73772954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772961	1.00[AMR][1000 genomes]
rs73772965	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772967	0.95[AFR][1000 genomes]
rs73772969	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772971	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772973	1.00[AMR][1000 genomes]
rs73772974	1.00[AMR][1000 genomes]
rs73772975	1.00[AMR][1000 genomes]
rs73772978	1.00[AMR][1000 genomes]
rs73772979	1.00[AMR][1000 genomes]
rs73772980	1.00[AMR][1000 genomes]
rs73772981	1.00[AMR][1000 genomes]
rs73772982	1.00[AMR][1000 genomes]
rs73772984	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772985	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772986	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772987	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772990	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772995	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772997	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772998	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773001	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777004	1.00[AMR][1000 genomes]
rs7743148	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754746	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755395	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763296	1.00[AMR][1000 genomes]
rs7768374	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768800	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133141400-133151800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links