Variant report

Variant	rs73772967
Chromosome Location	chr6:133159898-133159899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133148667..133150225-chr6:133157678..133160436,2	MCF-7	breast:
2	chr6:133133683..133137845-chr6:133157752..133163297,5	K562	blood:
3	chr6:133151897..133155334-chr6:133156928..133160559,4	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11964612	1.00[AFR][1000 genomes]
rs55634221	0.89[AFR][1000 genomes]
rs55739774	0.84[AFR][1000 genomes]
rs55757918	0.97[AFR][1000 genomes]
rs55927079	0.84[AFR][1000 genomes]
rs55937207	0.95[AFR][1000 genomes]
rs56195831	0.84[AFR][1000 genomes]
rs56253921	0.95[AFR][1000 genomes]
rs56272102	0.92[AFR][1000 genomes]
rs56321429	0.97[AFR][1000 genomes]
rs56335598	1.00[AFR][1000 genomes]
rs56347679	0.97[AFR][1000 genomes]
rs57507997	0.87[AFR][1000 genomes]
rs58066256	0.92[AFR][1000 genomes]
rs58879755	0.97[AFR][1000 genomes]
rs58969189	0.97[AFR][1000 genomes]
rs60308475	0.95[AFR][1000 genomes]
rs60864827	0.92[AFR][1000 genomes]
rs61019706	0.84[AFR][1000 genomes]
rs61588260	0.87[AFR][1000 genomes]
rs73772948	0.84[AFR][1000 genomes]
rs73772954	0.84[AFR][1000 genomes]
rs73772966	0.95[AFR][1000 genomes]
rs73772969	1.00[AFR][1000 genomes]
rs73772971	0.97[AFR][1000 genomes]
rs73772972	0.97[AFR][1000 genomes]
rs73772984	0.92[AFR][1000 genomes]
rs73772985	0.90[AFR][1000 genomes]
rs73772986	0.92[AFR][1000 genomes]
rs73772987	0.92[AFR][1000 genomes]
rs73772988	0.92[AFR][1000 genomes]
rs73772990	0.92[AFR][1000 genomes]
rs73772995	0.92[AFR][1000 genomes]
rs73772997	0.92[AFR][1000 genomes]
rs73772998	0.89[AFR][1000 genomes]
rs73773001	0.87[AFR][1000 genomes]
rs7743148	0.97[AFR][1000 genomes]
rs7754361	0.97[AFR][1000 genomes]
rs7754746	0.97[AFR][1000 genomes]
rs7755395	0.97[AFR][1000 genomes]
rs7768374	0.89[AFR][1000 genomes]
rs7768800	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	esv3403441	chr6:133157730-133160114	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3359825	chr6:133157739-133160116	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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