Variant report

Variant	rs57507997
Chromosome Location	chr6:133250722-133250723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11961405	1.00[AMR][1000 genomes]
rs11964612	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966336	1.00[AMR][1000 genomes]
rs11966419	1.00[AMR][1000 genomes]
rs55634221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55739774	0.82[AFR][1000 genomes]
rs55757918	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55927079	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55937207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56253921	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56272102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321429	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56335598	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56347679	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58267486	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58879755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58969189	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59494178	1.00[AMR][1000 genomes]
rs60308475	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60864827	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61019706	0.82[AFR][1000 genomes]
rs61588260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772948	0.82[AFR][1000 genomes]
rs73772954	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772961	1.00[AMR][1000 genomes]
rs73772965	1.00[AMR][1000 genomes]
rs73772966	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772967	0.87[AFR][1000 genomes]
rs73772969	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772973	1.00[AMR][1000 genomes]
rs73772974	1.00[AMR][1000 genomes]
rs73772975	1.00[AMR][1000 genomes]
rs73772978	1.00[AMR][1000 genomes]
rs73772979	1.00[AMR][1000 genomes]
rs73772980	1.00[AMR][1000 genomes]
rs73772981	1.00[AMR][1000 genomes]
rs73772982	1.00[AMR][1000 genomes]
rs73772984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772988	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772990	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777004	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743148	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754746	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763296	1.00[AMR][1000 genomes]
rs7768374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768800	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133249200-133252200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:133250000-133251200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:133250400-133250800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:133250400-133250800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:133250400-133250800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:133250600-133250800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133250600-133251000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:133250600-133251400	Enhancers	Fetal Heart	heart
9	chr6:133250600-133253000	Weak transcription	Brain Substantia Nigra	brain

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