Variant report

Variant	rs58267486
Chromosome Location	chr6:133259757-133259758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133134000..133137469-chr6:133257326..133260254,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206754	Chromatin interaction
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11961405	1.00[AMR][1000 genomes]
rs11964612	1.00[AMR][1000 genomes]
rs11966336	1.00[AMR][1000 genomes]
rs11966419	1.00[AMR][1000 genomes]
rs55634221	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55927079	1.00[AMR][1000 genomes]
rs55937207	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195831	1.00[AMR][1000 genomes]
rs56253921	1.00[AMR][1000 genomes]
rs56272102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321429	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56335598	1.00[AMR][1000 genomes]
rs56347679	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57507997	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066256	1.00[AMR][1000 genomes]
rs58879755	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58969189	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59494178	1.00[AMR][1000 genomes]
rs60308475	1.00[AMR][1000 genomes]
rs60864827	1.00[AMR][1000 genomes]
rs61588260	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772954	1.00[AMR][1000 genomes]
rs73772961	1.00[AMR][1000 genomes]
rs73772965	1.00[AMR][1000 genomes]
rs73772966	1.00[AMR][1000 genomes]
rs73772969	1.00[AMR][1000 genomes]
rs73772971	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772973	1.00[AMR][1000 genomes]
rs73772974	1.00[AMR][1000 genomes]
rs73772975	1.00[AMR][1000 genomes]
rs73772978	1.00[AMR][1000 genomes]
rs73772979	1.00[AMR][1000 genomes]
rs73772980	1.00[AMR][1000 genomes]
rs73772981	1.00[AMR][1000 genomes]
rs73772982	1.00[AMR][1000 genomes]
rs73772984	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772985	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772986	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772987	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772988	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772990	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772995	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772998	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743148	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754361	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754746	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755395	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763296	1.00[AMR][1000 genomes]
rs7768374	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768800	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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