Variant report

Variant	rs73775490
Chromosome Location	chr6:140394927-140394928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140392899..140394946-chr6:140602471..140604861,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61016687	1.00[AFR][1000 genomes]
rs73775474	0.81[AFR][1000 genomes]
rs73775486	1.00[AFR][1000 genomes]
rs73775493	0.84[AFR][1000 genomes]
rs73775497	0.88[AFR][1000 genomes]
rs73777411	0.88[AFR][1000 genomes]
rs73777414	0.88[AFR][1000 genomes]
rs73777418	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140390000-140395400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:140390000-140395400	Enhancers	NHDF-Ad	bronchial
3	chr6:140390200-140395400	Enhancers	NHLF	lung
4	chr6:140390400-140395000	Enhancers	Osteobl	bone
5	chr6:140391200-140395000	Enhancers	Fetal Lung	lung
6	chr6:140391400-140395000	Enhancers	Hela-S3	cervix
7	chr6:140391600-140395200	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:140391800-140395000	Enhancers	Fetal Brain Male	brain
9	chr6:140393000-140395000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:140393000-140399200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:140393000-140399200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:140393000-140399200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:140393000-140399400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:140393000-140400000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:140393000-140400400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:140393000-140400600	Weak transcription	Ovary	ovary
17	chr6:140393400-140395200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:140393600-140395000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:140393600-140396200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:140393600-140398800	Weak transcription	Fetal Heart	heart
21	chr6:140393600-140400400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:140393800-140399000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:140393800-140399000	Weak transcription	NH-A	brain
24	chr6:140393800-140399200	Weak transcription	Fetal Kidney	kidney
25	chr6:140394000-140395200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:140394000-140398800	Weak transcription	HUVEC	blood vessel
27	chr6:140394000-140400000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:140394200-140396800	Weak transcription	Fetal Brain Female	brain
29	chr6:140394400-140399200	Weak transcription	Adipose Nuclei	Adipose
30	chr6:140394400-140403800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:140394800-140395400	Enhancers	Fetal Stomach	stomach
32	chr6:140394800-140398400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:140394800-140398800	Weak transcription	Colon Smooth Muscle	Colon

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