Variant report

Variant	rs73775493
Chromosome Location	chr6:140401715-140401716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61016687	0.84[AFR][1000 genomes]
rs73775486	0.84[AFR][1000 genomes]
rs73775490	0.84[AFR][1000 genomes]
rs73775497	0.97[AFR][1000 genomes]
rs73777404	0.87[AFR][1000 genomes]
rs73777411	0.97[AFR][1000 genomes]
rs73777414	0.97[AFR][1000 genomes]
rs73777418	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140394400-140403800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:140398400-140401800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:140398800-140401800	Enhancers	Fetal Heart	heart
4	chr6:140399000-140401800	Enhancers	Fetal Lung	lung
5	chr6:140399400-140404000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:140400600-140401800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:140400600-140403600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:140400600-140403800	Weak transcription	HMEC	breast
9	chr6:140400600-140404000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:140400600-140404200	Weak transcription	Placenta	Placenta
11	chr6:140400800-140401800	Active TSS	Right Ventricle	heart
12	chr6:140400800-140403000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:140400800-140404000	Weak transcription	Aorta	Aorta
14	chr6:140400800-140404000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:140400800-140404000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:140400800-140404200	Weak transcription	Left Ventricle	heart
17	chr6:140401000-140403200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:140401000-140403200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:140401000-140403200	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:140401000-140403800	Weak transcription	Adipose Nuclei	Adipose
21	chr6:140401000-140407200	Weak transcription	Ovary	ovary
22	chr6:140401200-140403600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140401200-140403800	Weak transcription	Osteobl	bone
24	chr6:140401600-140401800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:140401600-140401800	Enhancers	NHLF	lung
26	chr6:140401600-140404000	Weak transcription	NHDF-Ad	bronchial

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