Variant report

Variant	rs73777414
Chromosome Location	chr6:140427044-140427045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694452..139697166-chr6:140425790..140427794,2	K562	blood:
2	chr6:140426160..140428952-chr6:140431227..140433652,3	K562	blood:
3	chr6:140426300..140428252-chr6:140459714..140462251,2	K562	blood:
4	chr6:140425203..140427422-chr6:140427957..140430875,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61016687	0.88[AFR][1000 genomes]
rs73775486	0.88[AFR][1000 genomes]
rs73775490	0.88[AFR][1000 genomes]
rs73775493	0.97[AFR][1000 genomes]
rs73775497	1.00[AFR][1000 genomes]
rs73777404	0.91[AFR][1000 genomes]
rs73777411	1.00[AFR][1000 genomes]
rs73777418	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140423200-140428200	Weak transcription	Fetal Heart	heart
2	chr6:140426400-140427200	Enhancers	HepG2	liver
3	chr6:140426400-140427400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:140426400-140427400	Enhancers	Fetal Brain Male	brain
5	chr6:140426400-140428600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:140426400-140428800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:140426600-140427600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:140426600-140428000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:140426600-140428200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:140426800-140427200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:140426800-140427200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:140426800-140427200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:140426800-140427200	Enhancers	A549	lung
14	chr6:140426800-140427400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:140426800-140427400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:140426800-140427400	Enhancers	K562	blood
17	chr6:140426800-140428200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:140426800-140431000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:140426800-140431000	Weak transcription	Brain Germinal Matrix	brain
20	chr6:140426800-140431000	Weak transcription	Fetal Brain Female	brain
21	chr6:140427000-140427200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:140427000-140427200	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr6:140427000-140427200	Enhancers	Colon Smooth Muscle	Colon
24	chr6:140427000-140427200	Enhancers	Fetal Intestine Small	intestine
25	chr6:140427000-140427200	Enhancers	Gastric	stomach
26	chr6:140427000-140427400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:140427000-140427400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:140427000-140427400	Enhancers	Placenta	Placenta
29	chr6:140427000-140427400	Enhancers	Right Atrium	heart
30	chr6:140427000-140427600	Enhancers	NHEK	skin
31	chr6:140427000-140428200	Weak transcription	Aorta	Aorta

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