Variant report

Variant	rs73775678
Chromosome Location	chr6:131841394-131841395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55835945	0.87[EUR][1000 genomes]
rs55960416	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56007685	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56978856	1.00[EUR][1000 genomes]
rs59167406	0.87[EUR][1000 genomes]
rs60638244	0.87[EUR][1000 genomes]
rs60912579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60931676	0.87[EUR][1000 genomes]
rs6920359	0.87[EUR][1000 genomes]
rs73775653	0.87[EUR][1000 genomes]
rs73775659	0.87[EUR][1000 genomes]
rs73775668	0.87[EUR][1000 genomes]
rs73775671	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73775673	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73775674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73775681	1.00[EUR][1000 genomes]
rs73778003	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886667	chr6:131807510-131876943	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131840400-131856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:131840600-131841400	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr6:131840600-131841400	Enhancers	Dnd41	blood
4	chr6:131840600-131841800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:131840600-131841800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:131840600-131841800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:131840600-131842000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:131840600-131842200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:131841000-131841400	Enhancers	HepG2	liver
10	chr6:131841000-131841600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:131841000-131841600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:131841000-131841600	Enhancers	Fetal Thymus	thymus
13	chr6:131841000-131841800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:131841000-131842000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:131841000-131842000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:131841200-131841600	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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