Variant report

Variant	rs73775681
Chromosome Location	chr6:131854364-131854365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55835945	0.87[EUR][1000 genomes]
rs55960416	1.00[EUR][1000 genomes]
rs56007685	0.87[EUR][1000 genomes]
rs56978856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59167406	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60638244	0.87[EUR][1000 genomes]
rs60912579	1.00[EUR][1000 genomes]
rs60931676	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6920359	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73775653	0.87[EUR][1000 genomes]
rs73775659	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73775668	0.87[EUR][1000 genomes]
rs73775671	0.87[EUR][1000 genomes]
rs73775673	0.87[EUR][1000 genomes]
rs73775674	0.87[EUR][1000 genomes]
rs73775678	1.00[EUR][1000 genomes]
rs73778003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779409	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886667	chr6:131807510-131876943	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131840400-131856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:131850200-131855400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:131850800-131855400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:131851600-131855400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:131852000-131854600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:131852000-131855400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:131852000-131855400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:131852200-131855400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:131852600-131855400	Enhancers	Primary T cells from cord blood	blood
10	chr6:131853200-131856000	Enhancers	Fetal Brain Male	brain
11	chr6:131853600-131855400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:131853800-131854400	Enhancers	Fetal Thymus	thymus
13	chr6:131853800-131855400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:131853800-131855400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:131853800-131855400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:131853800-131855800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:131853800-131856600	Enhancers	Dnd41	blood
18	chr6:131854000-131854800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:131854000-131855200	Enhancers	Fetal Intestine Large	intestine
20	chr6:131854000-131856400	Enhancers	HepG2	liver
21	chr6:131854200-131855000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:131854200-131855800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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