Variant report

Variant	rs73776017
Chromosome Location	chr5:98186154-98186155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGMB-5	chr5:98185053-98187266	NONHSAT102960

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10039507	0.83[EUR][1000 genomes]
rs10041263	0.83[EUR][1000 genomes]
rs10041335	0.83[EUR][1000 genomes]
rs10055595	0.83[EUR][1000 genomes]
rs10056842	0.83[EUR][1000 genomes]
rs10056918	0.83[EUR][1000 genomes]
rs10061406	0.85[EUR][1000 genomes]
rs10064594	0.81[EUR][1000 genomes]
rs10065808	0.83[EUR][1000 genomes]
rs10067635	0.83[EUR][1000 genomes]
rs10067866	0.83[EUR][1000 genomes]
rs10068003	0.83[EUR][1000 genomes]
rs10068917	0.83[EUR][1000 genomes]
rs11948998	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11952820	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11953096	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11956636	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958835	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12332280	0.83[EUR][1000 genomes]
rs12332340	0.83[EUR][1000 genomes]
rs12332364	0.81[EUR][1000 genomes]
rs12332383	0.83[EUR][1000 genomes]
rs161742	0.85[EUR][1000 genomes]
rs17166414	0.93[EUR][1000 genomes]
rs17166423	0.93[EUR][1000 genomes]
rs17166428	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17166439	0.93[EUR][1000 genomes]
rs17166455	0.91[EUR][1000 genomes]
rs17166484	0.87[EUR][1000 genomes]
rs17166575	0.83[EUR][1000 genomes]
rs2164986	0.93[EUR][1000 genomes]
rs2963709	0.83[EUR][1000 genomes]
rs327810	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36011435	0.93[EUR][1000 genomes]
rs44070	0.85[EUR][1000 genomes]
rs55780476	0.83[EUR][1000 genomes]
rs55821667	0.83[EUR][1000 genomes]
rs55844753	0.83[ASN][1000 genomes]
rs55854720	0.81[EUR][1000 genomes]
rs55862038	1.00[ASN][1000 genomes]
rs56086412	0.83[EUR][1000 genomes]
rs56096102	0.81[EUR][1000 genomes]
rs56115002	0.83[EUR][1000 genomes]
rs56153113	0.83[EUR][1000 genomes]
rs56159022	0.81[EUR][1000 genomes]
rs56160758	0.83[EUR][1000 genomes]
rs56232429	0.81[EUR][1000 genomes]
rs56331326	0.89[EUR][1000 genomes]
rs56331947	0.87[EUR][1000 genomes]
rs56400831	0.93[EUR][1000 genomes]
rs56898185	1.00[ASN][1000 genomes]
rs58224759	1.00[ASN][1000 genomes]
rs58479016	0.83[EUR][1000 genomes]
rs59181854	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59325325	1.00[ASN][1000 genomes]
rs61199566	1.00[ASN][1000 genomes]
rs6596551	1.00[ASN][1000 genomes]
rs6866629	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6880359	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6883467	0.83[EUR][1000 genomes]
rs6890358	0.83[EUR][1000 genomes]
rs6893282	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895358	0.83[EUR][1000 genomes]
rs727637	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776004	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776005	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776026	0.81[ASN][1000 genomes]
rs73776027	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73776028	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73776032	0.81[ASN][1000 genomes]
rs7708436	0.87[EUR][1000 genomes]
rs7726329	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737402	0.85[EUR][1000 genomes]
rs9327950	0.83[EUR][1000 genomes]
rs9327954	0.83[EUR][1000 genomes]
rs9327955	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98175600-98190000	Weak transcription	HUVEC	blood vessel
2	chr5:98175800-98190600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:98180200-98213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:98180800-98195200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:98181400-98190200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:98182400-98188400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:98182400-98189800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:98182400-98190400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:98182400-98203600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:98182600-98189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:98182600-98190400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:98182600-98190400	Weak transcription	Placenta	Placenta
13	chr5:98182600-98190800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:98182600-98191400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:98182600-98191600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:98182600-98197200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:98182600-98205000	Weak transcription	NHEK	skin
18	chr5:98182800-98190000	Weak transcription	HMEC	breast
19	chr5:98183000-98190400	Weak transcription	A549	lung
20	chr5:98183000-98201000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:98183200-98191400	Weak transcription	Fetal Lung	lung
22	chr5:98183200-98191400	Weak transcription	HepG2	liver
23	chr5:98185000-98189600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:98185000-98190200	Weak transcription	Liver	Liver
25	chr5:98185200-98203400	Weak transcription	Pancreas	Pancrea
26	chr5:98185400-98186600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr5:98185600-98194800	Weak transcription	Fetal Kidney	kidney
28	chr5:98185800-98190000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:98185800-98190200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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