Variant report

Variant	rs73779020
Chromosome Location	chr6:132616945-132616946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17061144	1.00[EUR][1000 genomes]
rs6920767	1.00[EUR][1000 genomes]
rs6925591	1.00[EUR][1000 genomes]
rs717604	1.00[EUR][1000 genomes]
rs73779008	1.00[EUR][1000 genomes]
rs73779012	1.00[EUR][1000 genomes]
rs73779068	1.00[EUR][1000 genomes]
rs7759277	1.00[EUR][1000 genomes]
rs7776326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132611000-132625600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:132611200-132617000	Weak transcription	NHDF-Ad	bronchial
3	chr6:132612600-132626400	Weak transcription	Fetal Stomach	stomach
4	chr6:132614400-132619000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132615000-132617000	Weak transcription	Fetal Kidney	kidney
6	chr6:132615400-132617200	Weak transcription	Osteobl	bone
7	chr6:132615600-132618000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
9	chr6:132616200-132620400	Weak transcription	Esophagus	oesophagus
10	chr6:132616200-132625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132616400-132617200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:132616600-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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