Variant report

Variant	rs7759277
Chromosome Location	chr6:132520113-132520114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132512891..132514685-chr6:132518793..132521767,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17061144	1.00[EUR][1000 genomes]
rs6906828	1.00[AMR][1000 genomes]
rs6920767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6925591	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs717604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779008	1.00[EUR][1000 genomes]
rs73779012	1.00[EUR][1000 genomes]
rs73779020	1.00[EUR][1000 genomes]
rs73779068	1.00[EUR][1000 genomes]
rs7776326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132512000-132523800	Weak transcription	Aorta	Aorta
2	chr6:132518600-132520600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:132518600-132520600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132518600-132521200	Enhancers	HSMMtube	muscle
5	chr6:132518800-132521400	Enhancers	HSMM	muscle
6	chr6:132519000-132520600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132519200-132520400	Enhancers	NHDF-Ad	bronchial
8	chr6:132519200-132520600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:132519200-132520600	Enhancers	NH-A	brain
10	chr6:132519200-132520600	Enhancers	NHLF	lung
11	chr6:132519200-132520800	Enhancers	HUVEC	blood vessel
12	chr6:132519200-132521400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:132519400-132520200	Enhancers	Fetal Muscle Leg	muscle
14	chr6:132519600-132520200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:132519600-132521000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:132519600-132530600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:132519800-132520200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132520000-132520200	Enhancers	Fetal Stomach	stomach
19	chr6:132520000-132520200	Flanking Active TSS	Osteobl	bone
20	chr6:132520000-132520800	Enhancers	Small Intestine	intestine
21	chr6:132520000-132520800	Enhancers	HMEC	breast
22	chr6:132520000-132521000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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