Variant report

Variant	rs73781362
Chromosome Location	chr6:144373982-144373983
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11964025	1.00[EUR][1000 genomes]
rs11964079	1.00[EUR][1000 genomes]
rs58877785	1.00[EUR][1000 genomes]
rs61504654	1.00[EUR][1000 genomes]
rs6902313	1.00[EUR][1000 genomes]
rs73596607	1.00[EUR][1000 genomes]
rs73596621	1.00[EUR][1000 genomes]
rs73596634	1.00[EUR][1000 genomes]
rs73596635	1.00[EUR][1000 genomes]
rs73596636	1.00[EUR][1000 genomes]
rs7744101	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144370200-144375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:144371200-144376200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:144371400-144375600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:144373400-144374000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:144373600-144374600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:144373600-144375800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:144373800-144376000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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