Variant report

Variant	rs58877785
Chromosome Location	chr6:144414224-144414225
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143830407..143832978-chr6:144413956..144415714,2	K562	blood:
2	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
3	chr6:144411988..144414800-chr6:144420184..144421924,2	MCF-7	breast:
4	chr6:144414215..144416666-chr6:144469400..144471689,2	K562	blood:
5	chr6:143831478..143833047-chr6:144412964..144415456,2	K562	blood:
6	chr6:144355070..144357503-chr6:144413513..144415682,2	K562	blood:
7	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135604	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11964025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964103	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61504654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596607	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73596621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73781362	1.00[EUR][1000 genomes]
rs7744101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144396600-144414800	Weak transcription	Gastric	stomach
2	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:144399800-144414800	Weak transcription	Ovary	ovary
5	chr6:144403200-144414800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:144404000-144414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:144404200-144414600	Weak transcription	Esophagus	oesophagus
8	chr6:144404200-144414800	Weak transcription	Lung	lung
9	chr6:144404200-144415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:144404200-144415000	Weak transcription	Thymus	Thymus
11	chr6:144404600-144414600	Weak transcription	Brain Germinal Matrix	brain
12	chr6:144404600-144414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:144404800-144414400	Weak transcription	Liver	Liver
14	chr6:144404800-144414800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:144404800-144415200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:144404800-144415200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:144405000-144414800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:144405000-144414800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:144405000-144415600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:144405200-144414600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:144405200-144414800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:144405400-144414800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:144405400-144415000	Weak transcription	Primary B cells from cord blood	blood
24	chr6:144405400-144415000	Weak transcription	Fetal Kidney	kidney
25	chr6:144405400-144415200	Weak transcription	Placenta	Placenta
26	chr6:144405600-144415200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:144405800-144415000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:144406000-144414600	Weak transcription	Fetal Thymus	thymus
29	chr6:144406000-144414600	Weak transcription	Pancreas	Pancrea
30	chr6:144406000-144416000	Weak transcription	Aorta	Aorta
31	chr6:144406200-144414400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:144407400-144414600	Weak transcription	Fetal Lung	lung
33	chr6:144407600-144414600	Weak transcription	Fetal Intestine Small	intestine
34	chr6:144407600-144414600	Weak transcription	HepG2	liver
35	chr6:144407600-144415200	Weak transcription	Brain Anterior Caudate	brain
36	chr6:144407600-144415200	Weak transcription	Fetal Stomach	stomach
37	chr6:144407600-144415400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:144407800-144414600	Weak transcription	NHEK	skin
39	chr6:144407800-144414800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:144407800-144414800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:144407800-144414800	Weak transcription	HSMM	muscle
42	chr6:144409000-144414800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:144409000-144414800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:144409000-144414800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:144409200-144414600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:144409200-144414800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:144409400-144414600	Weak transcription	Left Ventricle	heart
48	chr6:144409400-144414800	Weak transcription	Adipose Nuclei	Adipose
49	chr6:144409600-144414600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:144409600-144414800	Weak transcription	Right Ventricle	heart

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