Variant report

Variant	rs73596636
Chromosome Location	chr6:144408896-144408897
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144278626..144280839-chr6:144407684..144410223,2	K562	blood:
2	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
3	chr6:144408749..144411162-chr6:144425038..144426692,2	K562	blood:
4	chr6:144407402..144409658-chr6:144409973..144413470,4	K562	blood:
5	chr6:144383834..144386058-chr6:144408158..144410641,2	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11964025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964103	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58877785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61504654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596607	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73596621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73781362	1.00[EUR][1000 genomes]
rs7744101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144396600-144414800	Weak transcription	Gastric	stomach
2	chr6:144399400-144413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:144399800-144414800	Weak transcription	Ovary	ovary
6	chr6:144403200-144414800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:144404000-144414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:144404200-144414600	Weak transcription	Esophagus	oesophagus
9	chr6:144404200-144414800	Weak transcription	Lung	lung
10	chr6:144404200-144415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:144404200-144415000	Weak transcription	Thymus	Thymus
12	chr6:144404400-144414000	Weak transcription	Fetal Brain Female	brain
13	chr6:144404600-144414600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:144404600-144414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:144404800-144409200	Weak transcription	GM12878-XiMat	blood
16	chr6:144404800-144414400	Weak transcription	Liver	Liver
17	chr6:144404800-144414800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:144404800-144415200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:144404800-144415200	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:144405000-144414800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:144405000-144414800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:144405000-144415600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:144405200-144409000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:144405200-144414600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:144405200-144414800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:144405400-144414800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:144405400-144415000	Weak transcription	Primary B cells from cord blood	blood
28	chr6:144405400-144415000	Weak transcription	Fetal Kidney	kidney
29	chr6:144405400-144415200	Weak transcription	Placenta	Placenta
30	chr6:144405600-144415200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:144405800-144415000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:144406000-144414600	Weak transcription	Fetal Thymus	thymus
33	chr6:144406000-144414600	Weak transcription	Pancreas	Pancrea
34	chr6:144406000-144416000	Weak transcription	Aorta	Aorta
35	chr6:144406200-144414400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:144407400-144414600	Weak transcription	Fetal Lung	lung
37	chr6:144407600-144414600	Weak transcription	Fetal Intestine Small	intestine
38	chr6:144407600-144414600	Weak transcription	HepG2	liver
39	chr6:144407600-144415200	Weak transcription	Brain Anterior Caudate	brain
40	chr6:144407600-144415200	Weak transcription	Fetal Stomach	stomach
41	chr6:144407600-144415400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:144407800-144414600	Weak transcription	NHEK	skin
43	chr6:144407800-144414800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:144407800-144414800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:144407800-144414800	Weak transcription	HSMM	muscle
46	chr6:144408400-144409000	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:144408400-144409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:144408400-144409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:144408400-144409600	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr6:144408600-144409200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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