Variant report

Variant	rs73782219
Chromosome Location	chr5:113722935-113722936
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1058999	0.81[AFR][1000 genomes]
rs1457763	0.83[AFR][1000 genomes]
rs1496387	0.85[AFR][1000 genomes]
rs1965887	0.83[AFR][1000 genomes]
rs56202232	0.85[AFR][1000 genomes]
rs56864172	0.97[AFR][1000 genomes]
rs58444912	0.82[AFR][1000 genomes]
rs59344266	0.97[AFR][1000 genomes]
rs60280422	0.83[AFR][1000 genomes]
rs60765010	0.90[AFR][1000 genomes]
rs60989400	0.86[AFR][1000 genomes]
rs73782204	0.85[AFR][1000 genomes]
rs73782216	0.87[AFR][1000 genomes]
rs73782223	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113715000-113723800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:113721400-113723000	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:113721800-113725000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:113722000-113725400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:113722200-113725200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:113722400-113723800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:113722400-113724200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:113722400-113724400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:113722400-113724800	Enhancers	Liver	Liver
12	chr5:113722400-113725000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:113722600-113723000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:113722600-113725200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:113722800-113723000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:113722800-113723800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:113722800-113725000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:113722800-113725600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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