Variant report

Variant	rs1496387
Chromosome Location	chr5:113684468-113684469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076718	1.00[AMR][1000 genomes]
rs1058999	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1457763	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1965887	0.99[AFR][1000 genomes]
rs2047317	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28572100	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56202232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864172	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58444912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280422	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765010	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60989400	1.00[AMR][1000 genomes]
rs6859935	1.00[AMR][1000 genomes]
rs73779790	1.00[AMR][1000 genomes]
rs73779794	1.00[AMR][1000 genomes]
rs73782204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782216	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782219	0.85[AFR][1000 genomes]
rs73782223	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs991776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113683400-113690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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