Variant report

Variant	rs73779794
Chromosome Location	chr5:113652433-113652434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10076718	1.00[AMR][1000 genomes]
rs1058999	1.00[AMR][1000 genomes]
rs1457763	1.00[AMR][1000 genomes]
rs1496387	1.00[AMR][1000 genomes]
rs2047317	1.00[AMR][1000 genomes]
rs28572100	1.00[AMR][1000 genomes]
rs56202232	1.00[AMR][1000 genomes]
rs56864172	1.00[AMR][1000 genomes]
rs58444912	1.00[AMR][1000 genomes]
rs59344266	1.00[AMR][1000 genomes]
rs60280422	1.00[AMR][1000 genomes]
rs60765010	1.00[AMR][1000 genomes]
rs60989400	1.00[AMR][1000 genomes]
rs6859935	1.00[AMR][1000 genomes]
rs73779790	1.00[AMR][1000 genomes]
rs73782204	1.00[AMR][1000 genomes]
rs73782216	1.00[AMR][1000 genomes]
rs73782223	1.00[AMR][1000 genomes]
rs991776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113649000-113653400	Weak transcription	Fetal Heart	heart
2	chr5:113649800-113657000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:113650800-113655000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:113651800-113654000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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