Variant report

Variant	rs73779790
Chromosome Location	chr5:113645003-113645004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10076718	1.00[AMR][1000 genomes]
rs1058999	1.00[AMR][1000 genomes]
rs1457763	1.00[AMR][1000 genomes]
rs1496387	1.00[AMR][1000 genomes]
rs2047317	1.00[AMR][1000 genomes]
rs28572100	1.00[AMR][1000 genomes]
rs56202232	1.00[AMR][1000 genomes]
rs56864172	1.00[AMR][1000 genomes]
rs58444912	1.00[AMR][1000 genomes]
rs59344266	1.00[AMR][1000 genomes]
rs60280422	1.00[AMR][1000 genomes]
rs60765010	1.00[AMR][1000 genomes]
rs60989400	1.00[AMR][1000 genomes]
rs6859935	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779794	1.00[AMR][1000 genomes]
rs73782204	1.00[AMR][1000 genomes]
rs73782216	1.00[AMR][1000 genomes]
rs73782223	1.00[AMR][1000 genomes]
rs991776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113642000-113645800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:113643000-113645600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:113643200-113647800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:113644200-113646000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:113644200-113647200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:113644400-113645800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:113644400-113646000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:113644400-113647200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:113644400-113647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:113644600-113646400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:113644600-113647000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:113644600-113647400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:113645000-113645200	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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