Variant report

Variant	rs60765010
Chromosome Location	chr5:113742585-113742586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076718	1.00[AMR][1000 genomes]
rs1058999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1457763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1496387	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1965887	0.87[AFR][1000 genomes]
rs2047317	1.00[AMR][1000 genomes]
rs28572100	1.00[AMR][1000 genomes]
rs56202232	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58444912	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280422	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60989400	1.00[AMR][1000 genomes]
rs6859935	1.00[AMR][1000 genomes]
rs73779790	1.00[AMR][1000 genomes]
rs73779794	1.00[AMR][1000 genomes]
rs73782204	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782216	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782219	0.90[AFR][1000 genomes]
rs73782223	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs991776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:113736000-113742800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:113740800-113743200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113742400-113742600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:113742400-113743600	Enhancers	Liver	Liver
7	chr5:113742400-113744800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:113742400-113744800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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