Variant report

Variant	rs28572100
Chromosome Location	chr5:113714453-113714454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10076718	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1058999	1.00[AMR][1000 genomes]
rs1457763	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1496387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1965887	0.81[AFR][1000 genomes]
rs2047317	1.00[AMR][1000 genomes]
rs56202232	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864172	1.00[AMR][1000 genomes]
rs58444912	1.00[AMR][1000 genomes]
rs59344266	1.00[AMR][1000 genomes]
rs60280422	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765010	1.00[AMR][1000 genomes]
rs60989400	1.00[AMR][1000 genomes]
rs6859935	1.00[AMR][1000 genomes]
rs73779790	1.00[AMR][1000 genomes]
rs73779794	1.00[AMR][1000 genomes]
rs73782204	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782223	1.00[AMR][1000 genomes]
rs991776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
2	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:113713000-113714600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:113713000-113715000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:113713600-113714600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:113713800-113714800	Weak transcription	Pancreas	Pancrea
8	chr5:113714000-113714600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:113714000-113714600	Enhancers	Gastric	stomach
10	chr5:113714000-113714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:113714000-113714800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:113714200-113714800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:113714200-113715000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:113714200-113715000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:113714200-113715000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:113714200-113715000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:113714400-113715000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:113714400-113715000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:113714400-113715000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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