Variant report

Variant	rs73784532
Chromosome Location	chr5:127547848-127547849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11950276	1.00[AMR][1000 genomes]
rs11954795	1.00[AMR][1000 genomes]
rs34383505	1.00[AMR][1000 genomes]
rs55721059	1.00[AMR][1000 genomes]
rs56029012	1.00[AMR][1000 genomes]
rs59010574	1.00[AMR][1000 genomes]
rs60418844	1.00[AMR][1000 genomes]
rs73784540	1.00[AMR][1000 genomes]
rs73784541	1.00[AMR][1000 genomes]
rs73784545	1.00[AMR][1000 genomes]
rs73784558	1.00[AMR][1000 genomes]
rs73784559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv969272	chr5:127544309-127551686	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127537600-127549200	Weak transcription	A549	lung
2	chr5:127537600-127552600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:127544600-127552200	Weak transcription	Left Ventricle	heart
4	chr5:127544800-127548800	Weak transcription	Fetal Heart	heart
5	chr5:127547600-127548400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:127547800-127548000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:127547800-127548200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:127547800-127548600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:127547800-127548800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:127547800-127549400	Enhancers	Fetal Muscle Leg	muscle
11	chr5:127547800-127549800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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