Variant report

Variant	rs73784545
Chromosome Location	chr5:127577425-127577426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11950276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11954795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34383505	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55721059	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56029012	1.00[AMR][1000 genomes]
rs59010574	1.00[AMR][1000 genomes]
rs60418844	1.00[AMR][1000 genomes]
rs73784532	1.00[AMR][1000 genomes]
rs73784540	1.00[AMR][1000 genomes]
rs73784541	1.00[AMR][1000 genomes]
rs73784558	1.00[AMR][1000 genomes]
rs73784559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv599697	chr5:127563563-127731210	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127576000-127577800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:127576000-127577800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:127576200-127577800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:127576200-127577800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:127576200-127577800	Enhancers	NHDF-Ad	bronchial
6	chr5:127576200-127577800	Enhancers	Osteobl	bone
7	chr5:127576400-127577600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:127576800-127577800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:127576800-127577800	Enhancers	HSMMtube	muscle
10	chr5:127577400-127577800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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