Variant report

Variant	rs73784541
Chromosome Location	chr5:127563925-127563926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11950276	1.00[AMR][1000 genomes]
rs11954795	1.00[AMR][1000 genomes]
rs34383505	1.00[AMR][1000 genomes]
rs55721059	1.00[AMR][1000 genomes]
rs56029012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59010574	1.00[AMR][1000 genomes]
rs60418844	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784532	1.00[AMR][1000 genomes]
rs73784540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784545	1.00[AMR][1000 genomes]
rs73784558	1.00[AMR][1000 genomes]
rs73784559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv599697	chr5:127563563-127731210	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127561000-127564800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:127562600-127564800	Enhancers	NH-A	brain
3	chr5:127562800-127564800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:127562800-127565000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:127562800-127565200	Enhancers	Fetal Stomach	stomach
6	chr5:127563000-127564400	Enhancers	HMEC	breast
7	chr5:127563000-127564800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:127563000-127564800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:127563000-127564800	Enhancers	Fetal Muscle Leg	muscle
10	chr5:127563000-127564800	Enhancers	HSMM	muscle
11	chr5:127563000-127564800	Enhancers	NHDF-Ad	bronchial
12	chr5:127563200-127564400	Enhancers	Osteobl	bone
13	chr5:127563200-127564600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:127563200-127564800	Enhancers	NHLF	lung
15	chr5:127563400-127564200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr5:127563400-127564400	Enhancers	HSMMtube	muscle
17	chr5:127563400-127564600	Enhancers	Hela-S3	cervix
18	chr5:127563600-127564000	Enhancers	Esophagus	oesophagus
19	chr5:127563600-127564000	Enhancers	Fetal Brain Male	brain
20	chr5:127563600-127564000	Enhancers	Right Ventricle	heart
21	chr5:127563600-127564000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr5:127563600-127564000	Enhancers	HUVEC	blood vessel
23	chr5:127563600-127564200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:127563600-127564200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:127563600-127564400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:127563600-127564400	Enhancers	Fetal Brain Female	brain
27	chr5:127563600-127564400	Enhancers	NHEK	skin
28	chr5:127563600-127564600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:127563600-127564800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:127563600-127564800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:127563600-127564800	Enhancers	Ovary	ovary
32	chr5:127563800-127564000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr5:127563800-127564200	Enhancers	Fetal Muscle Trunk	muscle
34	chr5:127563800-127564200	Enhancers	Left Ventricle	heart
35	chr5:127563800-127564800	Enhancers	Fetal Lung	lung

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