Variant report

Variant	rs73787639
Chromosome Location	chr6:163841833-163841834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr6:163839808-163842261	K562	blood:	n/a	chr6:163841242-163841253 chr6:163840120-163840134 chr6:163841032-163841046 chr6:163840123-163840136 chr6:163841027-163841047 chr6:163841031-163841045 chr6:163840282-163840292 chr6:163842105-163842118 chr6:163840433-163840449 chr6:163840123-163840134 chr6:163840124-163840134 chr6:163842103-163842117 chr6:163841033-163841046 chr6:163840278-163840292 chr6:163842107-163842121 chr6:163841029-163841046 chr6:163840124-163840138 chr6:163841033-163841047 chr6:163842107-163842117

No.	Distal block	Cell Line	Cell type
1	chr6:163840864..163843794-chr6:163863418..163865440,3	K562	blood:
2	chr6:163841678..163843266-chr6:163843720..163845491,2	K562	blood:
3	chr6:163838995..163843341-chr6:163850269..163853237,5	K562	blood:
4	chr6:163841069..163843300-chr6:163990563..163993244,2	K562	blood:
5	chr6:163840085..163841837-chr6:163858856..163861674,2	MCF-7	breast:

Variant related genes	Relation type
QKI	TF binding region
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11962850	0.88[AFR][1000 genomes]
rs11964510	1.00[AFR][1000 genomes]
rs11964587	1.00[AFR][1000 genomes]
rs11965425	0.88[AFR][1000 genomes]
rs11966922	0.88[AFR][1000 genomes]
rs11969530	0.85[AFR][1000 genomes]
rs11970766	0.88[AFR][1000 genomes]
rs16888835	0.89[AFR][1000 genomes]
rs16895001	0.96[AFR][1000 genomes]
rs16895012	0.88[AFR][1000 genomes]
rs16895056	0.85[AFR][1000 genomes]
rs3846780	0.85[AFR][1000 genomes]
rs3903714	0.88[AFR][1000 genomes]
rs56702350	0.88[AFR][1000 genomes]
rs57292071	0.85[AFR][1000 genomes]
rs59845233	1.00[AFR][1000 genomes]
rs60965967	0.94[AFR][1000 genomes]
rs61306342	0.88[AFR][1000 genomes]
rs62428365	0.88[AFR][1000 genomes]
rs6937286	1.00[AFR][1000 genomes]
rs73784410	1.00[AFR][1000 genomes]
rs73784416	0.85[AFR][1000 genomes]
rs73787643	1.00[AFR][1000 genomes]
rs73787648	1.00[AFR][1000 genomes]
rs73787650	1.00[AFR][1000 genomes]
rs7754815	0.88[AFR][1000 genomes]
rs7755028	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163833000-163843400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:163833200-163842000	Active TSS	HSMMtube	muscle
3	chr6:163833400-163843600	Active TSS	Right Ventricle	heart
4	chr6:163833600-163842400	Active TSS	Psoas Muscle	Psoas
5	chr6:163833600-163843000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:163836200-163843400	Active TSS	Brain Angular Gyrus	brain
7	chr6:163837000-163843400	Active TSS	Right Atrium	heart
8	chr6:163837400-163857200	Weak transcription	Spleen	Spleen
9	chr6:163837800-163842000	Active TSS	Brain Cingulate Gyrus	brain
10	chr6:163837800-163842200	Active TSS	Brain Hippocampus Middle	brain
11	chr6:163837800-163843400	Weak transcription	Gastric	stomach
12	chr6:163837800-163851000	Weak transcription	Small Intestine	intestine
13	chr6:163838000-163842000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:163838000-163843400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:163838000-163843400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:163838000-163843600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:163838000-163843600	Weak transcription	Esophagus	oesophagus
18	chr6:163838000-163843800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:163838000-163847600	Weak transcription	Pancreas	Pancrea
20	chr6:163838000-163851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:163838000-163860600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:163838400-163842400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:163838400-163842600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:163838400-163845000	Weak transcription	Placenta	Placenta
25	chr6:163838600-163842200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:163838800-163845200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:163839000-163842000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:163839000-163842400	Enhancers	Rectal Smooth Muscle	rectum
29	chr6:163839200-163842200	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:163839200-163842400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:163839200-163843200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:163839200-163845400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:163839400-163842000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:163839600-163846200	Weak transcription	Thymus	Thymus
35	chr6:163839800-163842400	Enhancers	Fetal Lung	lung
36	chr6:163839800-163851600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:163840000-163842600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:163840000-163845000	Enhancers	Colon Smooth Muscle	Colon
39	chr6:163840200-163842600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr6:163840200-163842600	Enhancers	Fetal Kidney	kidney
41	chr6:163840200-163844800	Weak transcription	Hela-S3	cervix
42	chr6:163840200-163844800	Enhancers	HepG2	liver
43	chr6:163840600-163842000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:163840600-163842000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:163840800-163842000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:163840800-163842000	Enhancers	Stomach Mucosa	stomach
47	chr6:163840800-163842600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr6:163840800-163842600	Active TSS	Fetal Brain Female	brain
49	chr6:163840800-163842600	Flanking Active TSS	Fetal Heart	heart
50	chr6:163840800-163843000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links