Variant report

Variant	rs73784410
Chromosome Location	chr6:163888754-163888755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163887956..163890806-chr6:163903233..163905754,2	K562	blood:
2	chr6:163882705..163885341-chr6:163888682..163891213,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10484571	1.00[AMR][1000 genomes]
rs10484572	1.00[AMR][1000 genomes]
rs10484573	1.00[AMR][1000 genomes]
rs11962850	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964587	1.00[AFR][1000 genomes]
rs11964910	1.00[AMR][1000 genomes]
rs11965425	0.88[AFR][1000 genomes]
rs11965709	1.00[AMR][1000 genomes]
rs11966710	1.00[AMR][1000 genomes]
rs11966885	1.00[AMR][1000 genomes]
rs11966919	1.00[AMR][1000 genomes]
rs11966922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966958	1.00[AMR][1000 genomes]
rs11969530	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11970766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888835	0.89[AFR][1000 genomes]
rs16888837	1.00[AMR][1000 genomes]
rs16895001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895012	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895056	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895066	1.00[AMR][1000 genomes]
rs16895078	1.00[AMR][1000 genomes]
rs16895118	1.00[AMR][1000 genomes]
rs16895125	1.00[AMR][1000 genomes]
rs16895139	1.00[AMR][1000 genomes]
rs3846780	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3903714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56702350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57292071	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57394768	1.00[AMR][1000 genomes]
rs57952819	1.00[AMR][1000 genomes]
rs59845233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60965967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61306342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62428365	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784416	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787639	1.00[AFR][1000 genomes]
rs73787643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755028	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163878800-163910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:163879200-163891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:163879200-163891200	Weak transcription	Fetal Kidney	kidney
4	chr6:163879400-163891000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:163880400-163888800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:163880600-163890800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:163880600-163891000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:163880600-163891000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:163880600-163896600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:163880600-163897600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:163880600-163903200	Weak transcription	Pancreas	Pancrea
12	chr6:163880600-163906600	Weak transcription	Gastric	stomach
13	chr6:163881600-163890400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:163881800-163889000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:163881800-163890200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:163881800-163890600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:163881800-163890600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:163881800-163897600	Weak transcription	Ovary	ovary
19	chr6:163881800-163901000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:163881800-163910800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:163882000-163890600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:163882000-163891000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:163882000-163899800	Weak transcription	Placenta	Placenta
24	chr6:163882000-163900000	Weak transcription	Fetal Thymus	thymus
25	chr6:163882000-163906600	Weak transcription	Thymus	Thymus
26	chr6:163882200-163890600	Weak transcription	A549	lung
27	chr6:163882200-163890600	Weak transcription	Osteobl	bone
28	chr6:163882800-163890400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:163882800-163890800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:163883000-163889600	Weak transcription	Liver	Liver
31	chr6:163883000-163889600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:163883000-163889600	Weak transcription	HSMMtube	muscle
33	chr6:163883000-163891000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:163883000-163891000	Weak transcription	HUVEC	blood vessel
35	chr6:163883000-163895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:163883000-163900800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:163883000-163900800	Weak transcription	NH-A	brain
38	chr6:163883000-163906800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:163883400-163890000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:163883400-163890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:163883400-163890600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:163883800-163897000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:163884000-163890000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:163884000-163895800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:163884200-163889600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:163884200-163891000	Enhancers	Brain Angular Gyrus	brain
47	chr6:163884400-163890000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
48	chr6:163884600-163890800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:163884600-163891200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:163884800-163890000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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