Variant report

Variant	rs73787648
Chromosome Location	chr6:163867710-163867711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163866441..163869284-chr6:163870022..163872940,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10484571	1.00[AMR][1000 genomes]
rs10484572	1.00[AMR][1000 genomes]
rs10484573	1.00[AMR][1000 genomes]
rs11962850	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964587	1.00[AFR][1000 genomes]
rs11964910	1.00[AMR][1000 genomes]
rs11965425	0.88[AFR][1000 genomes]
rs11965709	1.00[AMR][1000 genomes]
rs11966710	1.00[AMR][1000 genomes]
rs11966885	1.00[AMR][1000 genomes]
rs11966919	1.00[AMR][1000 genomes]
rs11966922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966958	1.00[AMR][1000 genomes]
rs11969530	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11970766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888835	0.89[AFR][1000 genomes]
rs16888837	1.00[AMR][1000 genomes]
rs16895001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895012	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895056	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895066	1.00[AMR][1000 genomes]
rs16895078	1.00[AMR][1000 genomes]
rs16895118	1.00[AMR][1000 genomes]
rs16895125	1.00[AMR][1000 genomes]
rs16895139	1.00[AMR][1000 genomes]
rs3846780	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3903714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56702350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57292071	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57394768	1.00[AMR][1000 genomes]
rs57952819	1.00[AMR][1000 genomes]
rs59845233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60965967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61306342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62428365	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784416	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787639	1.00[AFR][1000 genomes]
rs73787643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755028	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
2	chr6:163845400-163877800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:163848800-163878400	Weak transcription	Pancreas	Pancrea
4	chr6:163852000-163880000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:163852200-163875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:163852200-163875600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:163858400-163876600	Weak transcription	Primary B cells from cord blood	blood
8	chr6:163859600-163876600	Weak transcription	HUVEC	blood vessel
9	chr6:163859600-163878000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:163860200-163875400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:163860200-163876200	Weak transcription	HSMM	muscle
12	chr6:163860200-163876200	Weak transcription	NHLF	lung
13	chr6:163860200-163877800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:163860400-163876600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:163860800-163878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:163860800-163880000	Weak transcription	Lung	lung
17	chr6:163862600-163878000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:163862800-163876400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:163862800-163878600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:163863000-163867800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:163863000-163876800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:163863000-163880200	Weak transcription	Esophagus	oesophagus
23	chr6:163863200-163868600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:163863200-163876400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:163863200-163879200	Weak transcription	Fetal Brain Male	brain
26	chr6:163863600-163871400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:163863600-163876600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:163863600-163878400	Weak transcription	Primary T cells from cord blood	blood
29	chr6:163863600-163878800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:163863800-163868600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:163863800-163877800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:163863800-163877800	Weak transcription	Placenta	Placenta
33	chr6:163863800-163878000	Weak transcription	HMEC	breast
34	chr6:163863800-163878200	Weak transcription	NHEK	skin
35	chr6:163863800-163878800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:163864600-163870000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:163864600-163875600	Weak transcription	Right Atrium	heart
38	chr6:163864800-163868600	Weak transcription	NHDF-Ad	bronchial
39	chr6:163864800-163876400	Enhancers	Brain Substantia Nigra	brain
40	chr6:163865000-163877000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:163865200-163867800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:163865200-163868000	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:163865200-163881400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:163865400-163867800	Weak transcription	Right Ventricle	heart
45	chr6:163865400-163869400	Enhancers	Brain Anterior Caudate	brain
46	chr6:163865400-163870000	Weak transcription	NH-A	brain
47	chr6:163865400-163870200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:163865400-163875600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:163865400-163875600	Weak transcription	Fetal Brain Female	brain
50	chr6:163865400-163877800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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