Variant report

Variant	rs16895125
Chromosome Location	chr6:163999755-163999756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163832916..163835689-chr6:163998720..164000334,2	K562	blood:
2	chr6:163982012..163984451-chr6:163998369..164000574,2	K562	blood:

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484571	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10484572	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10484573	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962850	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964510	1.00[AMR][1000 genomes]
rs11964910	1.00[AMR][1000 genomes]
rs11965425	0.88[AFR][1000 genomes]
rs11965709	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966919	1.00[AMR][1000 genomes]
rs11966922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969530	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11970766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888835	0.81[AFR][1000 genomes]
rs16888837	1.00[AMR][1000 genomes]
rs16895001	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895012	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895056	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895078	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895118	1.00[AMR][1000 genomes]
rs16895139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846780	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3903714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56702350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57292071	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57394768	1.00[AMR][1000 genomes]
rs57952819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59845233	1.00[AMR][1000 genomes]
rs60965967	1.00[AMR][1000 genomes]
rs61306342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62428365	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937286	1.00[AMR][1000 genomes]
rs73784410	1.00[AMR][1000 genomes]
rs73784416	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73787643	1.00[AMR][1000 genomes]
rs73787648	1.00[AMR][1000 genomes]
rs73787650	1.00[AMR][1000 genomes]
rs7754815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755028	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163970800-164000200	Weak transcription	Right Atrium	heart
2	chr6:163984800-164000000	Weak transcription	Right Ventricle	heart
3	chr6:163985000-164006800	Weak transcription	Spleen	Spleen
4	chr6:163986600-164007000	Weak transcription	Aorta	Aorta
5	chr6:163987600-164007000	Weak transcription	Hela-S3	cervix
6	chr6:163987800-164000200	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:163991200-164001800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:163992000-164000000	Strong transcription	HSMM	muscle
9	chr6:163992000-164000600	Weak transcription	Fetal Kidney	kidney
10	chr6:163992200-164000000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:163992200-164000000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:163992200-164000200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:163992200-164000400	Weak transcription	Pancreas	Pancrea
14	chr6:163992200-164000600	Weak transcription	Fetal Stomach	stomach
15	chr6:163992200-164002000	Weak transcription	Ovary	ovary
16	chr6:163992200-164007200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:163992200-164007200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:163992200-164009000	Weak transcription	GM12878-XiMat	blood
19	chr6:163992400-164000200	Weak transcription	Esophagus	oesophagus
20	chr6:163992400-164001800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:163992400-164005800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:163992400-164007000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:163992400-164007800	Weak transcription	Lung	lung
24	chr6:163993200-164000000	Weak transcription	NHEK	skin
25	chr6:163993200-164000200	Weak transcription	Primary B cells from cord blood	blood
26	chr6:163993200-164001200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:163993400-163999800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:163993600-164000200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:163994000-164004800	Weak transcription	HepG2	liver
30	chr6:163994000-164007200	Weak transcription	NHLF	lung
31	chr6:163994200-164006400	Weak transcription	A549	lung
32	chr6:163994200-164006400	Weak transcription	HUVEC	blood vessel
33	chr6:163994400-164006600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:163995200-164000000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:163995200-164007200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:163995400-164000200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr6:163995600-164000200	Weak transcription	HMEC	breast
38	chr6:163995600-164003400	Weak transcription	Psoas Muscle	Psoas
39	chr6:163995600-164006800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:163996000-164000400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:163996200-163999800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:163996200-164000200	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:163996200-164000400	Weak transcription	Osteobl	bone
44	chr6:163996200-164001000	Weak transcription	Fetal Lung	lung
45	chr6:163996200-164007000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:163996200-164007200	Weak transcription	NHDF-Ad	bronchial
47	chr6:163996600-164002000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:163996800-164000600	Weak transcription	Adipose Nuclei	Adipose
49	chr6:163996800-164001200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr6:163996800-164002200	Enhancers	Brain Anterior Caudate	brain

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