Variant report
| Variant | rs7379865 |
|---|---|
| Chromosome Location | chr5:107907611-107907612 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12187055 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12187964 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12188825 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12189219 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28862406 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4957769 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs55716366 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55803426 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55870048 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55938459 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56091616 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56346030 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs57264753 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60596842 | 0.82[ASN][1000 genomes] |
| rs6886991 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6895157 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73217616 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73217619 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7445150 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7725132 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7729844 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | nsv882690 | chr5:107834247-107954485 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:107906600-107909400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
