Variant report

Variant	rs28862406
Chromosome Location	chr5:107908006-107908007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12187055	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187964	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12187971	0.82[ASN][1000 genomes]
rs12188825	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12189219	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12652668	0.81[ASN][1000 genomes]
rs4128352	0.81[ASN][1000 genomes]
rs4128456	0.82[ASN][1000 genomes]
rs4957769	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55716366	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55803426	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55870048	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938459	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023946	0.82[ASN][1000 genomes]
rs56091616	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56346030	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57264753	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57782452	0.83[ASN][1000 genomes]
rs58916109	0.82[ASN][1000 genomes]
rs59661467	0.82[ASN][1000 genomes]
rs60596842	0.83[ASN][1000 genomes]
rs61500204	0.82[ASN][1000 genomes]
rs6886991	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6895157	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73217616	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217619	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73778562	0.81[ASN][1000 genomes]
rs7379865	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7445150	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7725132	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729844	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107906600-107909400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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