Variant report

Variant	rs61500204
Chromosome Location	chr5:107877623-107877624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10069821	0.86[ASN][1000 genomes]
rs12187055	0.82[ASN][1000 genomes]
rs12187964	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12187971	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188825	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12189219	0.80[ASN][1000 genomes]
rs12652668	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28862406	0.82[ASN][1000 genomes]
rs4128352	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4128456	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957768	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4957769	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55716366	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55803426	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55870048	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55938459	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56023946	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091616	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56310337	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57264753	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57782452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58916109	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59661467	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60596842	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6866420	0.81[ASN][1000 genomes]
rs6886991	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6889461	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6895157	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73217616	0.82[ASN][1000 genomes]
rs73778550	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73778562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7445150	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7725132	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7729844	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107872000-107884800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107873600-107878800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107873600-107883200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107874600-107879200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:107874800-107880000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:107874800-107880200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:107874800-107883600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:107875000-107878600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:107875000-107883600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:107875200-107878600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:107875200-107883400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:107877400-107877800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:107877600-107878000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links