Variant report

Variant	rs73778550
Chromosome Location	chr5:107857561-107857562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107856773..107859561-chr5:108084375..108085888,2	K562	blood:

Variant related genes	Relation type
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10069821	0.83[ASN][1000 genomes]
rs12187964	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12187971	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188825	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12652668	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4128352	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4128456	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4957768	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4957769	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55716366	0.84[EUR][1000 genomes]
rs55803426	0.80[EUR][1000 genomes]
rs55870048	0.80[EUR][1000 genomes]
rs55938459	0.80[EUR][1000 genomes]
rs56023946	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56091616	0.80[EUR][1000 genomes]
rs56310337	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57264753	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57782452	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58916109	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59661467	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60596842	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61500204	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6886991	0.83[EUR][1000 genomes]
rs6889461	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6895157	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73778562	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7445150	0.83[EUR][1000 genomes]
rs7725132	0.82[EUR][1000 genomes]
rs7729844	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107853200-107859200	Weak transcription	Fetal Intestine Large	intestine
2	chr5:107856200-107858200	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:107856400-107858000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:107856600-107857600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:107856600-107857600	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:107856600-107857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:107856600-107858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:107856600-107858200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:107856600-107858200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:107856800-107857600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:107856800-107857600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:107856800-107857600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:107856800-107858000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:107856800-107858000	Enhancers	K562	blood
15	chr5:107856800-107858200	Enhancers	Duodenum Mucosa	Duodenum
16	chr5:107857000-107857600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:107857000-107858200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr5:107857200-107857600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:107857200-107859800	Enhancers	Fetal Intestine Small	intestine
20	chr5:107857400-107860800	Enhancers	GM12878-XiMat	blood
21	chr5:107857400-107863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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