Variant report

Variant	rs56310337
Chromosome Location	chr5:107852843-107852844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10069821	0.82[ASN][1000 genomes]
rs12187964	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12187971	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12188825	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652668	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4128352	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4128456	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957768	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4957769	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55716366	0.84[EUR][1000 genomes]
rs55803426	0.80[EUR][1000 genomes]
rs55870048	0.80[EUR][1000 genomes]
rs55938459	0.80[EUR][1000 genomes]
rs56023946	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56091616	0.80[EUR][1000 genomes]
rs57264753	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57782452	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58916109	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59661467	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60596842	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61500204	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6886991	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6889461	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6895157	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73778550	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73778562	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7445150	0.83[EUR][1000 genomes]
rs7725132	0.82[EUR][1000 genomes]
rs7729844	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107848000-107853800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:107852000-107854000	Enhancers	Fetal Intestine Small	intestine
3	chr5:107852600-107853000	Weak transcription	Fetal Intestine Large	intestine
4	chr5:107852600-107856800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:107852800-107853400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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