Variant report

Variant	rs6895157
Chromosome Location	chr5:107892901-107892902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12187055	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12187964	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187971	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12188825	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189219	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12652668	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28862406	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4128352	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4128456	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4957768	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4957769	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55716366	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55803426	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55870048	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55938459	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56023946	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56091616	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56310337	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56346030	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57264753	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57782452	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58916109	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59661467	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60596842	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61500204	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6886991	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6889461	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73217616	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73217619	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73778550	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73778562	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7379865	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7445150	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7725132	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7729844	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107890000-107897200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:107891400-107893000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:107891400-107896400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:107891400-107897400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:107892000-107893000	Enhancers	Fetal Heart	heart
6	chr5:107892200-107893200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr5:107892400-107894000	Enhancers	K562	blood
8	chr5:107892600-107893600	Weak transcription	Fetal Stomach	stomach

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