Variant report

Variant	rs73831469
Chromosome Location	chr3:47064287-47064288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs55633581	1.00[AMR][1000 genomes]
rs55646108	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727789	1.00[AMR][1000 genomes]
rs55730344	1.00[AMR][1000 genomes]
rs55832326	1.00[AMR][1000 genomes]
rs56329054	1.00[AMR][1000 genomes]
rs57114752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57341796	1.00[AMR][1000 genomes]
rs58040348	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58529346	1.00[AMR][1000 genomes]
rs58558054	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58918862	1.00[AMR][1000 genomes]
rs59614145	1.00[AMR][1000 genomes]
rs59846120	1.00[AMR][1000 genomes]
rs60017851	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60100816	1.00[AMR][1000 genomes]
rs60444519	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831409	1.00[AMR][1000 genomes]
rs73831411	1.00[AMR][1000 genomes]
rs73831412	1.00[AMR][1000 genomes]
rs73831414	1.00[AMR][1000 genomes]
rs73831415	1.00[AMR][1000 genomes]
rs73831421	1.00[AMR][1000 genomes]
rs73831424	1.00[AMR][1000 genomes]
rs73831425	1.00[AMR][1000 genomes]
rs73831428	1.00[AMR][1000 genomes]
rs73831430	1.00[AMR][1000 genomes]
rs73831431	1.00[AMR][1000 genomes]
rs73831432	1.00[AMR][1000 genomes]
rs73831444	1.00[AMR][1000 genomes]
rs73831445	1.00[AMR][1000 genomes]
rs73831446	1.00[AMR][1000 genomes]
rs73831448	1.00[AMR][1000 genomes]
rs73831449	1.00[AMR][1000 genomes]
rs73831450	1.00[AMR][1000 genomes]
rs73831451	1.00[AMR][1000 genomes]
rs73831453	1.00[AMR][1000 genomes]
rs73831454	1.00[AMR][1000 genomes]
rs73831455	1.00[AMR][1000 genomes]
rs73831457	1.00[AMR][1000 genomes]
rs73831458	1.00[AMR][1000 genomes]
rs73831459	1.00[AMR][1000 genomes]
rs73831466	1.00[AMR][1000 genomes]
rs73831467	1.00[AMR][1000 genomes]
rs73831468	1.00[AMR][1000 genomes]
rs73831471	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831474	1.00[AMR][1000 genomes]
rs73831477	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831479	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831480	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831481	1.00[AMR][1000 genomes]
rs73831483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831488	1.00[AMR][1000 genomes]
rs73831492	1.00[AMR][1000 genomes]
rs73831493	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
5	nsv997261	chr3:47054766-47133680	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47057200-47066600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:47058800-47069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:47059400-47066400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:47059400-47066400	Strong transcription	Primary T cells from cord blood	blood
5	chr3:47059800-47067200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:47059800-47073000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:47060000-47064400	Genic enhancers	Dnd41	blood
8	chr3:47060000-47064800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr3:47060000-47066400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:47060400-47066600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:47060600-47073800	Weak transcription	Lung	lung
12	chr3:47061000-47076200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:47061000-47079000	Weak transcription	Fetal Brain Male	brain
14	chr3:47061200-47069600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:47061200-47069800	Weak transcription	Spleen	Spleen
16	chr3:47061200-47072400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:47061200-47076000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:47061200-47083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:47061400-47065800	Strong transcription	Fetal Thymus	thymus
20	chr3:47061400-47066400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:47061400-47069600	Weak transcription	HMEC	breast
22	chr3:47061400-47073600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:47061400-47074600	Weak transcription	Hela-S3	cervix
24	chr3:47061400-47076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:47061400-47076200	Weak transcription	HSMMtube	muscle
26	chr3:47061600-47066200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:47061600-47066400	Weak transcription	NH-A	brain
28	chr3:47061800-47066200	Weak transcription	Brain Angular Gyrus	brain
29	chr3:47061800-47066400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:47061800-47066600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:47061800-47069800	Weak transcription	Placenta	Placenta
32	chr3:47061800-47074200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:47061800-47074600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:47062000-47064400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:47062000-47064600	Enhancers	Stomach Smooth Muscle	stomach
36	chr3:47062000-47066400	Weak transcription	Brain Anterior Caudate	brain
37	chr3:47062000-47066600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:47062000-47069600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:47062000-47069600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:47062000-47069600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:47062000-47070200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr3:47062000-47071800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr3:47062000-47075400	Weak transcription	A549	lung
44	chr3:47062200-47064400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:47062200-47066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:47062200-47066400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:47062200-47066400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:47062200-47069600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:47062200-47069600	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:47062200-47070200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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