Variant report

Variant	rs73831488
Chromosome Location	chr3:47305621-47305622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47304767..47306689-chr3:47364605..47367397,2	K562	blood:
2	chr3:47302969..47305795-chr3:47313917..47316703,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55646108	1.00[AMR][1000 genomes]
rs56401311	1.00[AMR][1000 genomes]
rs57114752	1.00[AMR][1000 genomes]
rs58040348	1.00[AMR][1000 genomes]
rs58558054	1.00[AMR][1000 genomes]
rs58918862	1.00[AMR][1000 genomes]
rs60017851	1.00[AMR][1000 genomes]
rs60054745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444519	1.00[AMR][1000 genomes]
rs61316433	1.00[AMR][1000 genomes]
rs73831453	1.00[AMR][1000 genomes]
rs73831454	1.00[AMR][1000 genomes]
rs73831455	1.00[AMR][1000 genomes]
rs73831457	1.00[AMR][1000 genomes]
rs73831458	1.00[AMR][1000 genomes]
rs73831459	1.00[AMR][1000 genomes]
rs73831466	1.00[AMR][1000 genomes]
rs73831467	1.00[AMR][1000 genomes]
rs73831468	1.00[AMR][1000 genomes]
rs73831469	1.00[AMR][1000 genomes]
rs73831471	1.00[AMR][1000 genomes]
rs73831472	1.00[AMR][1000 genomes]
rs73831474	1.00[AMR][1000 genomes]
rs73831477	1.00[AMR][1000 genomes]
rs73831479	1.00[AMR][1000 genomes]
rs73831480	1.00[AMR][1000 genomes]
rs73831481	1.00[AMR][1000 genomes]
rs73831483	1.00[AMR][1000 genomes]
rs73831485	1.00[AMR][1000 genomes]
rs73831492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831496	1.00[AMR][1000 genomes]
rs73831497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831501	1.00[AMR][1000 genomes]
rs73834305	1.00[AMR][1000 genomes]
rs73834308	1.00[AMR][1000 genomes]
rs73834311	1.00[AMR][1000 genomes]
rs73834323	1.00[AMR][1000 genomes]
rs9872793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1007714	chr3:47084387-47331570	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1014457	chr3:47222292-47335175	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv536560	chr3:47222292-47335175	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47264200-47322200	Weak transcription	Gastric	stomach
2	chr3:47267200-47308000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:47270800-47307800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:47271400-47308000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:47282800-47322400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:47285400-47315800	Weak transcription	Pancreas	Pancrea
7	chr3:47285600-47312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:47293600-47323200	Weak transcription	Spleen	Spleen
9	chr3:47299400-47308200	Weak transcription	Right Atrium	heart
10	chr3:47299600-47307800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:47300800-47322800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:47301000-47306800	Weak transcription	Lung	lung
13	chr3:47301000-47322800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:47301200-47323000	Weak transcription	Psoas Muscle	Psoas
15	chr3:47302200-47308000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:47302400-47307200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:47302600-47314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:47302600-47322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:47302800-47323200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:47303200-47306800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:47303200-47308400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:47303400-47307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:47303400-47308000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:47303400-47308000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:47303600-47306600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:47305000-47305800	Strong transcription	Fetal Intestine Small	intestine
27	chr3:47305200-47307200	Strong transcription	Brain Anterior Caudate	brain
28	chr3:47305600-47323200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links