Variant report

Variant	rs73834305
Chromosome Location	chr3:47428701-47428702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:47421496..47423015-chr3:47427840..47429974,2	MCF-7	breast:
2	chr3:47324292..47325959-chr3:47428265..47430683,2	K562	blood:
3	chr3:47422470..47424996-chr3:47425920..47429233,6	K562	blood:
4	chr3:47428453..47430945-chr3:47431745..47434301,2	K562	blood:

Variant related genes	Relation type
ENSG00000114648	Chromatin interaction
ENSG00000088727	Chromatin interaction
ENSG00000260236	Chromatin interaction
ENSG00000076201	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56401311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57114752	1.00[AMR][1000 genomes]
rs58558054	1.00[AMR][1000 genomes]
rs60017851	1.00[AMR][1000 genomes]
rs60054745	1.00[AMR][1000 genomes]
rs60444519	1.00[AMR][1000 genomes]
rs61316433	1.00[AMR][1000 genomes]
rs73831477	1.00[AMR][1000 genomes]
rs73831479	1.00[AMR][1000 genomes]
rs73831480	1.00[AMR][1000 genomes]
rs73831481	1.00[AMR][1000 genomes]
rs73831483	1.00[AMR][1000 genomes]
rs73831485	1.00[AMR][1000 genomes]
rs73831488	1.00[AMR][1000 genomes]
rs73831492	1.00[AMR][1000 genomes]
rs73831493	1.00[AMR][1000 genomes]
rs73831496	1.00[AMR][1000 genomes]
rs73831497	1.00[AMR][1000 genomes]
rs73831501	1.00[AMR][1000 genomes]
rs73834308	1.00[AMR][1000 genomes]
rs73834311	1.00[AMR][1000 genomes]
rs73834323	1.00[AMR][1000 genomes]
rs9872793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv1807553	chr3:47393616-47470763	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv3802	chr3:47396674-47441951	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47423600-47429400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:47423600-47431800	Weak transcription	Lung	lung
3	chr3:47423600-47435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:47423600-47435400	Weak transcription	Aorta	Aorta
5	chr3:47423600-47446000	Weak transcription	Colonic Mucosa	Colon
6	chr3:47423800-47429400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:47423800-47429800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:47423800-47429800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:47423800-47429800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:47423800-47430200	Weak transcription	HUVEC	blood vessel
11	chr3:47423800-47430400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:47423800-47433800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:47423800-47435000	Weak transcription	Fetal Heart	heart
14	chr3:47423800-47435000	Weak transcription	NHDF-Ad	bronchial
15	chr3:47423800-47435400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:47423800-47435400	Weak transcription	Fetal Lung	lung
17	chr3:47423800-47435400	Weak transcription	NH-A	brain
18	chr3:47423800-47435600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:47423800-47435600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:47423800-47435600	Weak transcription	Hela-S3	cervix
21	chr3:47423800-47435600	Weak transcription	HSMMtube	muscle
22	chr3:47423800-47435800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:47423800-47436400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:47423800-47436600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:47423800-47438800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:47423800-47447400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:47423800-47448000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:47423800-47449800	Weak transcription	A549	lung
29	chr3:47424000-47429200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:47424000-47436400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:47424000-47446000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:47424200-47429800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:47424600-47431000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:47424600-47431000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr3:47424600-47433200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:47424800-47430200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:47424800-47430400	Weak transcription	Spleen	Spleen
38	chr3:47424800-47435600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:47425000-47429400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:47425000-47429400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr3:47425000-47430600	Weak transcription	Fetal Kidney	kidney
42	chr3:47425000-47431000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:47425200-47429600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:47425200-47432400	Strong transcription	Fetal Stomach	stomach
45	chr3:47425200-47435600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:47425400-47429800	Weak transcription	Placenta	Placenta
47	chr3:47425400-47430400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:47425400-47430800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:47425400-47433200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:47425400-47434200	Strong transcription	Fetal Muscle Leg	muscle

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