Variant report

Variant	rs73835519
Chromosome Location	chr4:86600128-86600129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86599190..86601552-chr4:86603029..86605951,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58758405	0.89[AFR][1000 genomes]
rs73835527	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86589000-86601600	Weak transcription	HSMMtube	muscle
2	chr4:86590000-86604600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
4	chr4:86594400-86601400	Weak transcription	Spleen	Spleen
5	chr4:86594400-86601600	Weak transcription	HSMM	muscle
6	chr4:86596600-86601600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:86597200-86600600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:86597200-86602400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:86597200-86603600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:86597400-86609000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:86597800-86600600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:86598000-86600200	Enhancers	NHDF-Ad	bronchial
13	chr4:86598200-86602800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:86598200-86603400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:86598400-86603000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:86598800-86602200	Weak transcription	Brain Anterior Caudate	brain
17	chr4:86598800-86602400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:86598800-86602400	Weak transcription	Fetal Stomach	stomach
19	chr4:86599200-86600200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:86599200-86602200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:86599200-86602200	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:86599200-86603400	Enhancers	Primary B cells from peripheral blood	blood
23	chr4:86599400-86602200	Weak transcription	K562	blood
24	chr4:86599400-86602600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:86599400-86603400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:86599600-86600800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr4:86599800-86600800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:86599800-86602400	Genic enhancers	Primary B cells from cord blood	blood
29	chr4:86599800-86602400	Weak transcription	Brain Substantia Nigra	brain
30	chr4:86600000-86600200	Enhancers	Primary hematopoietic stem cells	blood
31	chr4:86600000-86600800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr4:86600000-86601600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:86600000-86602200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:86600000-86603800	Enhancers	Primary monocytes fromperipheralblood	blood

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