Variant report

Variant	rs73839147
Chromosome Location	chr4:110783226-110783227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11568841	1.00[AMR][1000 genomes]
rs11568877	1.00[AMR][1000 genomes]
rs11568894	1.00[AMR][1000 genomes]
rs11568926	1.00[AMR][1000 genomes]
rs41464250	1.00[AMR][1000 genomes]
rs41482245	1.00[AMR][1000 genomes]
rs41505549	1.00[AMR][1000 genomes]
rs56370719	1.00[AMR][1000 genomes]
rs57656325	1.00[AMR][1000 genomes]
rs58710468	1.00[AFR][1000 genomes]
rs60612011	1.00[AMR][1000 genomes]
rs61359801	1.00[AMR][1000 genomes]
rs61539771	1.00[AMR][1000 genomes]
rs73839149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839508	1.00[AMR][1000 genomes]
rs73839511	1.00[AMR][1000 genomes]
rs73839513	1.00[AMR][1000 genomes]
rs73839514	1.00[AMR][1000 genomes]
rs73839518	1.00[AMR][1000 genomes]
rs73841105	1.00[AMR][1000 genomes]
rs73841109	1.00[AMR][1000 genomes]
rs73841113	1.00[AMR][1000 genomes]
rs73841124	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110783200-110783400	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links