Variant report
| Variant | rs73839508 |
|---|---|
| Chromosome Location | chr4:110946684-110946685 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:110943212..110945000-chr4:110945421..110947872,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs1007050 | 1.00[EUR][1000 genomes] |
| rs10488880 | 1.00[EUR][1000 genomes] |
| rs11568841 | 1.00[AMR][1000 genomes] |
| rs11568877 | 1.00[AMR][1000 genomes] |
| rs11568894 | 1.00[AMR][1000 genomes] |
| rs11568926 | 1.00[AMR][1000 genomes] |
| rs11569124 | 1.00[EUR][1000 genomes] |
| rs11569132 | 1.00[EUR][1000 genomes] |
| rs11569146 | 1.00[EUR][1000 genomes] |
| rs11936595 | 1.00[EUR][1000 genomes] |
| rs11940838 | 1.00[EUR][1000 genomes] |
| rs17040933 | 1.00[EUR][1000 genomes] |
| rs17041176 | 1.00[EUR][1000 genomes] |
| rs41464250 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41482245 | 1.00[AMR][1000 genomes] |
| rs41505549 | 1.00[AMR][1000 genomes] |
| rs4698796 | 1.00[EUR][1000 genomes] |
| rs56285361 | 1.00[EUR][1000 genomes] |
| rs56370719 | 1.00[AMR][1000 genomes] |
| rs56737575 | 1.00[EUR][1000 genomes] |
| rs57656325 | 1.00[AMR][1000 genomes] |
| rs60612011 | 1.00[AMR][1000 genomes] |
| rs61359801 | 1.00[AMR][1000 genomes] |
| rs61539771 | 1.00[AMR][1000 genomes] |
| rs6811614 | 1.00[EUR][1000 genomes] |
| rs6829540 | 1.00[EUR][1000 genomes] |
| rs6832396 | 1.00[EUR][1000 genomes] |
| rs6854247 | 1.00[EUR][1000 genomes] |
| rs72892672 | 1.00[EUR][1000 genomes] |
| rs73839147 | 1.00[AMR][1000 genomes] |
| rs73839149 | 1.00[AMR][1000 genomes] |
| rs73839166 | 1.00[EUR][1000 genomes] |
| rs73839504 | 1.00[EUR][1000 genomes] |
| rs73839511 | 1.00[AMR][1000 genomes] |
| rs73839513 | 1.00[AMR][1000 genomes] |
| rs73839514 | 1.00[AMR][1000 genomes] |
| rs73839518 | 1.00[AMR][1000 genomes] |
| rs73841105 | 1.00[AMR][1000 genomes] |
| rs73841109 | 1.00[AMR][1000 genomes] |
| rs73841113 | 1.00[AMR][1000 genomes] |
| rs73841124 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7681770 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869392 | chr4:110945459-111235071 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110945400-110949000 | Enhancers | Brain Germinal Matrix | brain |
| 2 | chr4:110946200-110947400 | Enhancers | Fetal Lung | lung |
