Variant report

Variant	rs73841109
Chromosome Location	chr4:110869067-110869068
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11568841	1.00[AMR][1000 genomes]
rs11568877	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568926	1.00[AMR][1000 genomes]
rs41464250	1.00[AMR][1000 genomes]
rs41482245	1.00[AMR][1000 genomes]
rs41505549	1.00[AMR][1000 genomes]
rs56370719	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57656325	1.00[AMR][1000 genomes]
rs60612011	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61207651	1.00[AFR][1000 genomes]
rs61359801	1.00[AMR][1000 genomes]
rs61539771	1.00[AMR][1000 genomes]
rs73839147	1.00[AMR][1000 genomes]
rs73839149	1.00[AMR][1000 genomes]
rs73839508	1.00[AMR][1000 genomes]
rs73839511	1.00[AMR][1000 genomes]
rs73839513	1.00[AMR][1000 genomes]
rs73839514	1.00[AMR][1000 genomes]
rs73839518	1.00[AMR][1000 genomes]
rs73841105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841113	1.00[AMR][1000 genomes]
rs73841124	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110852400-110873800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110853800-110871200	Weak transcription	Left Ventricle	heart
4	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
5	chr4:110860800-110874800	Weak transcription	Pancreas	Pancrea
6	chr4:110864000-110871000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:110864000-110876400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:110866200-110870000	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:110868400-110869400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:110868400-110869600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:110868400-110869600	Enhancers	NHEK	skin
12	chr4:110868600-110869200	Enhancers	NH-A	brain
13	chr4:110868600-110869600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:110868600-110869600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:110868600-110869600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:110868600-110869600	Enhancers	HMEC	breast
17	chr4:110868800-110869600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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