Variant report

Variant	rs73846989
Chromosome Location	chr4:129722551-129722552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129711670..129714323-chr4:129722510..129724849,2	K562	blood:
2	chr4:129715664..129722952-chr4:129727051..129734458,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077684	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs55707740	1.00[AMR][1000 genomes]
rs55753141	1.00[AMR][1000 genomes]
rs56002856	1.00[AMR][1000 genomes]
rs56017737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56069250	1.00[AMR][1000 genomes]
rs57056827	1.00[AMR][1000 genomes]
rs57542268	1.00[AMR][1000 genomes]
rs57925170	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58701517	1.00[AMR][1000 genomes]
rs58799593	1.00[AMR][1000 genomes]
rs60005322	1.00[AMR][1000 genomes]
rs73846992	1.00[AMR][1000 genomes]
rs73846993	1.00[AMR][1000 genomes]
rs73846994	1.00[AMR][1000 genomes]
rs73846999	1.00[AMR][1000 genomes]
rs73847304	1.00[AMR][1000 genomes]
rs73847312	1.00[AMR][1000 genomes]
rs73847313	1.00[AMR][1000 genomes]
rs73847314	1.00[AMR][1000 genomes]
rs73847316	1.00[AMR][1000 genomes]
rs73847317	1.00[AMR][1000 genomes]
rs73847322	1.00[AMR][1000 genomes]
rs73847323	1.00[AMR][1000 genomes]
rs73847326	1.00[AMR][1000 genomes]
rs73847327	1.00[AMR][1000 genomes]
rs73847329	1.00[AMR][1000 genomes]
rs73847331	1.00[AMR][1000 genomes]
rs73847332	1.00[AMR][1000 genomes]
rs73847333	1.00[AMR][1000 genomes]
rs73847334	1.00[AMR][1000 genomes]
rs73847341	1.00[AMR][1000 genomes]
rs73847342	1.00[AMR][1000 genomes]
rs73847345	1.00[AMR][1000 genomes]
rs73847347	1.00[AMR][1000 genomes]
rs73847354	1.00[AMR][1000 genomes]
rs73847355	1.00[AMR][1000 genomes]
rs73847358	1.00[AMR][1000 genomes]
rs73850005	1.00[AMR][1000 genomes]
rs73850009	1.00[AMR][1000 genomes]
rs73850010	1.00[AMR][1000 genomes]
rs73850011	1.00[AMR][1000 genomes]
rs73850012	1.00[AMR][1000 genomes]
rs73850013	1.00[AMR][1000 genomes]
rs73850015	1.00[AMR][1000 genomes]
rs73850016	1.00[AMR][1000 genomes]
rs73850017	1.00[AMR][1000 genomes]
rs73850018	1.00[AMR][1000 genomes]
rs73850019	1.00[AMR][1000 genomes]
rs73850027	1.00[AMR][1000 genomes]
rs73850028	1.00[AMR][1000 genomes]
rs73850035	1.00[AMR][1000 genomes]
rs73850039	1.00[AMR][1000 genomes]
rs73850041	1.00[AMR][1000 genomes]
rs73850059	1.00[AMR][1000 genomes]
rs73850061	1.00[AMR][1000 genomes]
rs73850064	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1020801	chr4:129658178-129778086	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv537248	chr4:129658178-129778086	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129715400-129722800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:129719800-129726200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:129720000-129726400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:129721000-129722800	Enhancers	Fetal Intestine Large	intestine
5	chr4:129721000-129722800	Enhancers	Fetal Intestine Small	intestine
6	chr4:129721000-129723200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:129721000-129723400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:129721000-129724600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:129721200-129723600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:129721600-129723600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:129721600-129724200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:129721600-129725400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:129721800-129724000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:129722000-129723600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:129722000-129724200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:129722200-129722600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:129722400-129723600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:129722400-129723800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links