Variant report

Variant	rs73850337
Chromosome Location	chr4:129433344-129433345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129433187..129435067-chr4:129474379..129476936,2	MCF-7	breast:
2	chr4:129403296..129405086-chr4:129433123..129435816,2	K562	blood:
3	chr4:129429967..129432562-chr4:129432650..129436803,3	K562	blood:
4	chr4:129432424..129434544-chr4:129437663..129439865,2	K562	blood:
5	chr4:129432623..129434897-chr4:129435545..129438401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273077	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10049718	1.00[EUR][1000 genomes]
rs11098961	1.00[AMR][1000 genomes]
rs11098972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940014	0.82[AFR][1000 genomes]
rs1216403	1.00[EUR][1000 genomes]
rs1216414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1216421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1216423	1.00[AMR][1000 genomes]
rs1216429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1216430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013448	1.00[EUR][1000 genomes]
rs185993	1.00[EUR][1000 genomes]
rs209981	1.00[EUR][1000 genomes]
rs453871	1.00[EUR][1000 genomes]
rs56317429	1.00[EUR][1000 genomes]
rs72932236	1.00[EUR][1000 genomes]
rs72932261	1.00[EUR][1000 genomes]
rs7695750	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129376600-129435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:129425800-129445600	Weak transcription	Gastric	stomach
3	chr4:129429800-129434200	Weak transcription	HSMMtube	muscle
4	chr4:129430600-129438600	Weak transcription	Fetal Heart	heart
5	chr4:129431200-129440800	Weak transcription	Left Ventricle	heart
6	chr4:129431400-129434000	Weak transcription	A549	lung
7	chr4:129431600-129434000	Weak transcription	K562	blood
8	chr4:129431600-129438800	Weak transcription	Pancreas	Pancrea
9	chr4:129432600-129434000	Enhancers	Placenta	Placenta
10	chr4:129432800-129434400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:129433000-129434000	Weak transcription	Osteobl	bone
12	chr4:129433000-129438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:129433200-129433400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:129433200-129433400	ZNF genes & repeats	Lung	lung
15	chr4:129433200-129433400	Enhancers	HSMM	muscle
16	chr4:129433200-129433600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:129433200-129433600	Enhancers	Fetal Muscle Leg	muscle
18	chr4:129433200-129434400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:129433200-129434400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:129433200-129434400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:129433200-129434400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:129433200-129434600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr4:129433200-129435600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:129433200-129435800	Enhancers	NHDF-Ad	bronchial
25	chr4:129433200-129437600	Weak transcription	Right Atrium	heart

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