Variant report

Variant	rs11098961
Chromosome Location	chr4:129315804-129315805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129309240..129311697-chr4:129314341..129316608,2	MCF-7	breast:
2	chr4:129315644..129318412-chr4:129731026..129733358,2	K562	blood:

Variant related genes	Relation type
ENSG00000077684	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11098972	1.00[AMR][1000 genomes]
rs1216414	1.00[AMR][1000 genomes]
rs1216421	1.00[AMR][1000 genomes]
rs1216423	1.00[AMR][1000 genomes]
rs1216429	1.00[AMR][1000 genomes]
rs1216430	1.00[AMR][1000 genomes]
rs17013246	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs17013258	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59018637	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60220093	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60570598	1.00[EUR][1000 genomes]
rs61069673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268946	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61697796	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73850337	1.00[AMR][1000 genomes]
rs7687777	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129308200-129317000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:129310200-129316000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:129311400-129316000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:129314000-129317000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:129314000-129317200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:129314800-129316000	Enhancers	Fetal Heart	heart
7	chr4:129314800-129316000	Weak transcription	HSMM	muscle
8	chr4:129314800-129316000	Weak transcription	NHLF	lung
9	chr4:129314800-129316400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:129315000-129316000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:129315000-129316000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:129315000-129316000	Weak transcription	HSMMtube	muscle
13	chr4:129315000-129316000	Weak transcription	K562	blood
14	chr4:129315000-129316000	Weak transcription	Osteobl	bone
15	chr4:129315000-129316200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:129315400-129316400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:129315400-129317000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:129315600-129316200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:129315600-129316400	Enhancers	NHDF-Ad	bronchial
20	chr4:129315800-129316000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:129315800-129316200	Enhancers	NHEK	skin

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