Variant report

Variant	rs61268946
Chromosome Location	chr4:129351280-129351281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11098961	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17013246	0.87[ASN][1000 genomes]
rs17013258	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59018637	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60220093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60570598	1.00[EUR][1000 genomes]
rs61069673	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61697796	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7687777	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695750	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129349000-129352000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:129349600-129358400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:129349600-129362000	Weak transcription	Left Ventricle	heart
4	chr4:129350000-129362000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:129350200-129357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:129351200-129352600	ZNF genes & repeats	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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