Variant report

Variant	rs59018637
Chromosome Location	chr4:129378424-129378425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129375160..129378617-chr4:129730147..129733611,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077684	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11098961	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17013246	0.85[ASN][1000 genomes]
rs17013258	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60220093	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60570598	1.00[EUR][1000 genomes]
rs61069673	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61268946	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61697796	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687777	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695750	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129370000-129378800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:129374000-129379400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr4:129375600-129381400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:129376000-129385000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:129376400-129378800	Enhancers	NHDF-Ad	bronchial
6	chr4:129376600-129378600	Weak transcription	Left Ventricle	heart
7	chr4:129376600-129378800	Enhancers	A549	lung
8	chr4:129376600-129380200	Weak transcription	Hela-S3	cervix
9	chr4:129376600-129382200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:129376600-129389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:129376600-129393200	Weak transcription	Placenta	Placenta
12	chr4:129376600-129406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:129376600-129435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:129376800-129382000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:129377000-129380600	Enhancers	Fetal Brain Female	brain
16	chr4:129377000-129382000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:129377000-129382200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:129377000-129382200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:129377000-129382400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:129377000-129388800	Weak transcription	Right Atrium	heart
21	chr4:129377000-129389000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:129377000-129397000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:129377200-129381600	Weak transcription	HUVEC	blood vessel
24	chr4:129377400-129378800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr4:129377600-129378600	Weak transcription	Fetal Brain Male	brain
26	chr4:129377600-129378600	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:129377600-129378600	Weak transcription	Lung	lung
28	chr4:129377600-129394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:129377800-129378600	Weak transcription	Brain Anterior Caudate	brain
30	chr4:129377800-129378600	Weak transcription	Psoas Muscle	Psoas
31	chr4:129377800-129381200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:129377800-129382400	Weak transcription	Ovary	ovary
33	chr4:129378000-129379000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:129378000-129382400	Weak transcription	Brain Substantia Nigra	brain
35	chr4:129378200-129378800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:129378200-129378800	Enhancers	Brain Germinal Matrix	brain
37	chr4:129378200-129381600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:129378400-129378600	Enhancers	Fetal Heart	heart
39	chr4:129378400-129378600	Enhancers	HSMM	muscle
40	chr4:129378400-129378800	Enhancers	NHLF	lung
41	chr4:129378400-129378800	Enhancers	Osteobl	bone
42	chr4:129378400-129382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:129378400-129382400	Weak transcription	HSMMtube	muscle
44	chr4:129378400-129388200	Weak transcription	Aorta	Aorta

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