Variant report

Variant	rs73852898
Chromosome Location	chr4:147568754-147568755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28397039	1.00[EUR][1000 genomes]
rs28694531	1.00[EUR][1000 genomes]
rs55789811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55979124	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56925901	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56939845	1.00[EUR][1000 genomes]
rs59895059	1.00[EUR][1000 genomes]
rs6825623	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6830203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843989	1.00[EUR][1000 genomes]
rs6857438	1.00[EUR][1000 genomes]
rs73852704	1.00[EUR][1000 genomes]
rs73852707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852869	1.00[EUR][1000 genomes]
rs73852883	1.00[EUR][1000 genomes]
rs73852895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855650	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830107	chr4:147452434-147635720	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv880238	chr4:147469559-147617963	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2753640	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2754145	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147567800-147568800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
2	chr4:147568400-147568800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:147568400-147568800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:147568400-147568800	Bivalent Enhancer	Brain Hippocampus Middle	brain
5	chr4:147568400-147569200	Bivalent Enhancer	Fetal Brain Male	brain
6	chr4:147568600-147568800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
7	chr4:147568600-147568800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:147568600-147568800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:147568600-147568800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
10	chr4:147568600-147568800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:147568600-147568800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:147568600-147568800	Bivalent Enhancer	Brain Anterior Caudate	brain
13	chr4:147568600-147568800	Bivalent Enhancer	Pancreatic Islets	Pancreatic Islet
14	chr4:147568600-147568800	Bivalent Enhancer	HUVEC	blood vessel
15	chr4:147568600-147569000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr4:147568600-147569000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr4:147568600-147569000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:147568600-147569000	Bivalent Enhancer	Fetal Brain Female	brain
19	chr4:147568600-147569600	Bivalent Enhancer	Brain Germinal Matrix	brain
20	chr4:147568600-147569800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
21	chr4:147568600-147569800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr4:147568600-147569800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr4:147568600-147569800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr4:147568600-147569800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:147568600-147570200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
26	chr4:147568600-147570200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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