Variant report

Variant	rs56939845
Chromosome Location	chr4:147713740-147713741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10519843	1.00[EUR][1000 genomes]
rs1437260	1.00[EUR][1000 genomes]
rs17022075	1.00[EUR][1000 genomes]
rs17022182	1.00[EUR][1000 genomes]
rs17022229	1.00[EUR][1000 genomes]
rs17022275	1.00[EUR][1000 genomes]
rs28397039	1.00[EUR][1000 genomes]
rs28694531	1.00[EUR][1000 genomes]
rs4301138	1.00[EUR][1000 genomes]
rs55789811	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55979124	1.00[EUR][1000 genomes]
rs56919404	1.00[EUR][1000 genomes]
rs59033491	1.00[EUR][1000 genomes]
rs59895059	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6813219	1.00[EUR][1000 genomes]
rs6825623	1.00[EUR][1000 genomes]
rs6830203	1.00[EUR][1000 genomes]
rs6850704	1.00[EUR][1000 genomes]
rs6857438	1.00[EUR][1000 genomes]
rs73852704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852707	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73852718	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73852721	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73852722	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73852734	1.00[EUR][1000 genomes]
rs73852736	1.00[EUR][1000 genomes]
rs73852787	1.00[EUR][1000 genomes]
rs73852788	1.00[EUR][1000 genomes]
rs73852789	1.00[EUR][1000 genomes]
rs73852790	1.00[EUR][1000 genomes]
rs73852791	1.00[EUR][1000 genomes]
rs73852795	1.00[EUR][1000 genomes]
rs73852796	1.00[EUR][1000 genomes]
rs73852797	1.00[EUR][1000 genomes]
rs73852883	1.00[EUR][1000 genomes]
rs73852895	1.00[EUR][1000 genomes]
rs73852898	1.00[EUR][1000 genomes]
rs73853259	1.00[EUR][1000 genomes]
rs73853275	1.00[EUR][1000 genomes]
rs73853277	1.00[EUR][1000 genomes]
rs73853283	1.00[EUR][1000 genomes]
rs73853285	1.00[EUR][1000 genomes]
rs73855102	1.00[EUR][1000 genomes]
rs73855650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv880239	chr4:147666797-147779999	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147712200-147714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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